| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1269841 = | 131 (1.010) | 23 (0.200) | 9/162 | NT | 21.0% | intergenic (‑31/+397) | ldrB/ldrC | toxic polypeptide, small/toxic polypeptide, small |
| ? | NC_000913 | 1270354 = | 54 (0.460) | intergenic (‑9/+395) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter | |||||
CTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1269947‑1269841‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGG > NC_000913/1270354‑1270450 CTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAA < 1:3370215/100‑1 TGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAAT < 2:207069/100‑1 TGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTACAAGAAT < 1:1916945/100‑1 GGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATA > 2:2344757/1‑100 GTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAG > 1:252571/1‑100 GTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAG > 2:409106/1‑100 TGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGC < 1:1421457/100‑1 GGCATTGGTTGCTGGAAAGAGAAATCCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCC < 2:579739/100‑1 GGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCC > 2:2192497/1‑100 GGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCC > 2:108825/1‑100 GGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCC > 1:3114479/1‑100 GCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAGAACCTGACAACGGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCG > 2:2331434/1‑100 CATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGC > 1:1010697/1‑100 CATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGC < 1:1643307/100‑1 GGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAAT > 1:1764967/1‑100 AAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACAT > 2:2893337/1‑100 CCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGG < 2:1427559/100‑1 CGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGC < 2:654272/100‑1 GCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCT < 1:1006393/100‑1 GTTGAGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTC < 1:393137/100‑1 GTTGAGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTC < 1:393111/100‑1 TTGAGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCT < 1:1837221/100‑1 TTGAGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCT < 1:127584/100‑1 TGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT < 1:651016/100‑1 TGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT < 1:3539651/100‑1 TGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT < 2:618504/100‑1 TGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT < 1:3339393/100‑1 GAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTG < 1:1850154/100‑1 GAGAGGGAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT < 1:2893360/99‑1 AGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGA < 1:3103541/100‑1 AGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTAAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGA < 1:3181269/100‑1 GAGGTAAAACCTGACAACAGAACGGGGACTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAA < 2:1338103/100‑1 AGGTAAAACCTGACAACAGAACGGGGTCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAG < 2:1634923/100‑1 gtacAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTG < 1:1354467/96‑1 GTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG < 2:1764959/100‑1 CTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTT < 2:2902650/100‑1 aACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGG‑TTCAAGATTAGCCCCCGTTCTGTTGTCAGG < 2:776505/95‑1 ATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGT > 2:1781351/1‑100 TAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTG > 1:1684741/1‑100 TAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTG > 1:1633609/1‑100 TAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTATCAACGTG > 2:1682309/1‑100 AGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGC > 1:2187707/1‑100 GCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCG > 1:2840172/1‑100 GCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCG > 1:1214019/1‑100 GCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCG < 2:765024/100‑1 CGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGG < 1:3485822/100‑1 CGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGG < 1:3032138/100‑1 CGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGG < 1:1133266/100‑1 CTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1269947‑1269841‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG‑TCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGG > NC_000913/1270354‑1270450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |