New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2218172 =106 (0.820)21 (0.170) 13/168 NT 16.1% coding (386/1158 nt) yehY putative ABC transporter permease
?NC_000913 2218212 = 119 (0.980)coding (346/1158 nt) yehY putative ABC transporter permease

CAACTGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2218275‑2218172
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAAT  >  NC_000913/2218212‑2218309
                                                                                                                                                                                                          
CAACTGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCC                                                                                                        >  1:3015721/1‑100
 AACTGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCG                                                                                                       <  1:3083058/100‑1
   CTGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCC                                                                                                     <  1:1219670/100‑1
   CTGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCC                                                                                                     >  1:657757/1‑100
   CTGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTCTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCC                                                                                                     >  2:3034156/1‑100
    TGGCGCAAAATGGCAGTGCGCTGGCGGGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG                                                                                                    <  2:1208413/100‑1
    TGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG                                                                                                    <  2:968386/100‑1
    TGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG                                                                                                    <  2:945065/100‑1
    TGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG                                                                                                    <  2:2755251/100‑1
    TGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG                                                                                                    <  2:1009771/100‑1
     GGCGCAAGATGCCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGACTGCGGCGCACGCATTGCTGGCCTGTAGCGGTGCCATCCGCCG                                                                                                    >  2:1911996/1‑99
     GGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG                                                                                                    >  2:3574365/1‑99
                                  CCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGG                                                                      >  1:1288960/1‑100
                                                        GCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATT                                                >  2:721533/1‑100
                                                        GCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATT                                                >  2:1839900/1‑100
                                                           GGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTG                                             >  2:536213/1‑100
                                                           GGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTG                                             >  1:972742/1‑100
                                                           GGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTG                                             >  1:237853/1‑100
                                                            GCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGGAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGC                                            >  2:161964/1‑100
                                                            GCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGC                                            >  1:1683749/1‑100
                                                            GCTGCGGCGCTGGCATTGCTGGCCTGTAGCGAGGCCATGCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCCTTTTGC                                            >  2:839835/1‑100
                                                              TGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGC                                          >  2:1717164/1‑100
                                                                  GCGCTGGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGT                                      >  1:2083039/1‑99
                                                                   CGCTGGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTG                                    >  1:798885/1‑100
                                                                   CGCTGGCATTGCTGGCCTGTAGCGATGCCA‑ACGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCACCAGCGCACAGCCATTTTGCGCCAGT                                      >  2:342134/1‑98
                                                                    GCTGGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGG                                   >  1:2789520/1‑100
                                                                    GCTGGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGG                                   >  1:1778973/1‑100
                                                                     CTGGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGG                                  >  2:614607/1‑100
                                                                      TGGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGT                                 >  2:1311506/1‑100
                                                                      TGGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGG                                  >  1:2965753/1‑99
                                                                       GGCATTGCTGGCCTGTAGCGATGCCATCCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGT                                 <  1:536215/100‑1
                                                                       GGCATTGCTGGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTC                                >  2:455407/1‑100
                                                                                GGCCTGTAGCGATGCCA‑GCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTT                       >  2:2794319/1‑100
                                                                                                  ggGCCGCAGCCAGCCAGAGACCACTGCCGAGGCTGGGACTCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCGTTCCAGCTCCCCACACC        <  2:1487080/96‑1
                                                                                                   CGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGC     <  1:371/100‑1
                                                                                                   CGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGC     >  2:375759/1‑100
                                                                                                   CGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGC     >  1:2050021/1‑100
                                                                                                    GCCGCAGCTATCCAGAAACCACTGCCGAGGCTGGGACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCA    <  1:3039008/100‑1
                                                                                                     CCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAA   <  1:1770445/100‑1
                                                                                                     CCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAA   >  2:3236016/1‑100
                                                                                                     CCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAA   >  2:3090297/1‑100
                                                                                                      CGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAAT  <  1:1433988/100‑1
                                                                                                       GCAGCCAGCCATAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCA    <  2:387090/97‑1
                                                                                                       GCAGCCAGCCAGAAACCACTACCGATGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCTCCTTTCCAGCTCCCCACACCAG      <  2:1616245/95‑1
                                                                                                                                                                                                          
CAACTGGCGCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAGTGGTTTCTGGCTGGCTGCGGCGCTGGCATTGCTGGCCTGTAGCGATGCCATCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2218275‑2218172
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAAT  >  NC_000913/2218212‑2218309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.