New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2304590	118 (0.910)	17 (0.140)	9/164	NT	15.1%	noncoding (174/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	= 2304834	82 (0.690)					noncoding (418/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

GGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304486‑2304590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGC  <  NC_000913/2304834‑2304736                                                                                                                                                                                                              GGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGTCGGTTGC                                                                                                          <  1:1909521/100‑1  GCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCC                                                                                                         <  1:565430/100‑1   CGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCCCCCCGTAGGCCAGACTAGGCGGTCACGCCGCGTCCGACATCCAACCCCCGAGCCGGTTGCCT                                                                                                        <  1:676989/100‑1   CGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCT                                                                                                        >  2:2843494/1‑100   CGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCT                                                                                                        >  2:1131808/1‑100   CGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCT                                                                                                        >  1:3519036/1‑100    GCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTG                                                                                                       <  1:2141082/100‑1    GCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTG                                                                                                       >  1:2655692/1‑100    GCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTG                                                                                                       <  1:269627/100‑1      GTCTGATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAT                                                                                                     <  1:3034286/100‑1       TCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAT                                                                                                     >  2:200704/1‑99                          CTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCGCCAGCGTCGCAT                                                                                 <  1:424345/100‑1                            GTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCA                                                                               <  1:3262582/100‑1                               AAGTGCGGCACCCCGTCGGTCGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGC                                                                            <  2:2129231/100‑1                               AAGTGCGGCACCCCGTAGGTCGGATAAGGCGGTCACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGC                                                                            <  2:3201937/100‑1                               AAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGC                                                                            <  2:1058968/100‑1                               AAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGC                                                                            <  1:960376/100‑1                                  TGCTGCCCCCCGTAGGTCAGACAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  2:1350205/100‑1                                  TGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  1:361734/100‑1                                  TGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  1:1324803/100‑1                                  TGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  1:788022/100‑1                                   gctcCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACC                                                                        <  1:1175122/96‑1                                   GCGGCACCCCGTAGGTCGGACAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  2:2623359/99‑1                                   GCGCCACCCCGTAGGTCGGAGACGGCGGTCACGCCGCAGCCGACATCTAACGCCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  2:2623349/99‑1                                    ctcCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCG                                                                       <  2:3588047/97‑1                                       CACCCCGTAGCTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG                                                                      <  1:1670246/98‑1                                         CCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCG                                                                  <  1:111956/100‑1                                                       tAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCG                                                    <  2:2180702/99‑1                                                                                             gtgtagtgCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGAGTAACCGCCTTATCCAACCTACGGGGTGGA              <  2:2605488/92‑1                                                                                               ggagggCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTG                <  2:993083/90‑1                                                                                                   GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTT        >  1:1354159/1‑100                                                                                                    CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTC       <  1:2423969/100‑1                                                                                                     CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACT         <  2:2693853/97‑1                                                                                                     CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCAC          <  2:587843/96‑1                                                                                                      TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCAC     <  2:2910886/100‑1                                                                                                      TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCAC     <  1:3228806/100‑1                                                                                                      TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCAC     >  1:929878/1‑100                                                                                                      TGATAAGACGCACCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCAC     <  2:1695836/100‑1                                                                                                       GATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACA    >  2:2475714/1‑100                                                                                                       GATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACA    >  1:2708733/1‑100                                                                                                        ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAG   >  2:1336204/1‑100                                                                                                         TAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGC  >  1:969618/1‑100                                                                                                                                                                                                              GGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304486‑2304590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACGTTGGATGTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGC  <  NC_000913/2304834‑2304736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.