| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2454020 = | 112 (0.870) | 17 (0.150) | 8/160 | NT | 15.1% | pseudogene (982/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| ? | NC_000913 | 2454054 = | 90 (0.780) | pseudogene (948/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein | |||||
GCTACGCGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2454127‑2454020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtttcgtaAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACATTTG > NC_000913/2454054‑2454152 GCTACGCGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACC < 1:72416/100‑1 CTACGCGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCG > 2:1606335/1‑100 CGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCG < 2:1562759/100‑1 CGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCG < 1:3619536/100‑1 CGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCG > 1:2319817/1‑100 GCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGT < 1:795137/100‑1 GCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGT > 2:2265942/1‑100 GCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCG > 1:644441/1‑99 CCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTA > 1:1709377/1‑100 CCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTA < 1:2403298/100‑1 TGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAA > 1:2759263/1‑100 GATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGT > 1:1185904/1‑100 GATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGT > 1:1544111/1‑100 GATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGT > 1:1642292/1‑100 ATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTC > 1:489768/1‑100 ATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCACCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTC > 2:181850/1‑100 TTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCT > 1:121815/1‑100 TTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCT > 1:975470/1‑100 TTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACCCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCT > 2:400737/1‑100 TTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTG > 1:1817109/1‑100 TACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGG > 1:2048569/1‑100 TACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCGGACGGTCACTTTTGCTGTGGTGTGTTCCACGCCGGGAATGTCT > 1:1984247/1‑98 ACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGC > 2:961605/1‑100 ACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGC > 1:1975632/1‑100 ACGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACAGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGC > 2:2551609/1‑100 ACGAAACGCAGGTTCCGGCTGGACCGCTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACCCCCGAACTGTCTGGC > 2:744504/1‑100 CGAAACGCAGGTTCCGGCTGGACCGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCG > 2:407190/1‑100 CGTTTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTGTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGG < 1:2121042/99‑1 TTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAAC < 1:2526714/100‑1 TTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAAC < 2:245614/100‑1 TTCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAAC > 1:1163695/1‑100 tcaTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACA < 2:2727834/97‑1 TCGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAGTGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACA > 1:1998537/1‑100 CGTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACAT > 1:562432/1‑100 GTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACATT > 2:1891548/1‑100 GTAAATCACACGCCCCATCTGGCTGACGGTCACTTTTCCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACATT > 2:1950488/1‑100 AAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACATTTG < 2:2669644/100‑1 GCTACGCGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2454127‑2454020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtttcgtaAATCACACGCCCCATCTGGCTGACGGTCACTTTTGCTGTGGTGTGTGCCACGCCGGAAATGTCTGGCGCGTAGCCGCGCAGATTGGGAGGCAACATTTG > NC_000913/2454054‑2454152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |