New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3231252 =NA (NA)17 (0.140) 7/164 NT NA noncoding (1/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 3231282 = NA (NA)noncoding (31/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences

TCCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3231357‑3231252
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  >  NC_000913/3231282‑3231380
                                                                                                                                                                                                             
TCCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCA                                                                                                           <  1:693880/100‑1
TCCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCA                                                                                                           <  1:2943815/100‑1
 CCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGAACATGTAGGGCGGATAAGGCGTTTACGCCGCAT                                                                                                          >  2:485051/1‑100
  CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGTGTTTACGCCGCATC                                                                                                         >  1:3188101/1‑100
  CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                         >  1:1094935/1‑100
  CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                         >  1:1516494/1‑100
  CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                         >  1:1525437/1‑100
  CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                         >  1:2338958/1‑100
  CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                         >  1:2483892/1‑100
  CGCCAGTGGCGCGGTGCAGGTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                         <  2:2880926/100‑1
     CAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATGCGGCGTAAACGCCTTATCCGC                                                                                                      <  1:3206104/100‑1
     CAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGC                                                                                                      <  1:116318/100‑1
     CAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGC                                                                                                      <  1:2729338/100‑1
      AGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                     <  1:2573936/100‑1
      AGTGGCGCGGTGCAGGTGCCGGATGCAACGCTTGCCTCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                     <  2:1592370/100‑1
       GTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                     <  2:1898429/99‑1
                                                             GGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAA                                              >  2:991730/1‑100
                                                                    ttccgatctGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACC                                       <  2:2083067/91‑1
                                                                         TAGGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCAACGCGC                                   >  2:435925/1‑99
                                                                          AGGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCACTCCTCCTGCCCGGATAAAACGCGGCAAGCGCTGCATCCGTCACCTGCGCCCCGCCA                                 >  2:1688242/1‑100
                                                                            GGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACT                               >  1:1572268/1‑100
                                                                            GGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACT                               >  2:1170485/1‑100
                                                                             GCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCagatcggaa                              >  1:2083080/1‑91
                                                                             GCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTG                              >  1:1362593/1‑100
                                                                              CGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGG                             >  1:176561/1‑100
                                                                              CGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGG                             >  2:3454568/1‑100
                                                                               GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAGTCCTCCTGGCCGGATAAAACGCGGCAAGCGGTGCATCCGGCAACTGCACCGCGCCACTGGC                            >  2:298006/1‑100
                                                                               GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGC                            >  1:3215421/1‑100
                                                                               GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGC                            >  1:1587795/1‑100
                                                                               GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGC                            >  2:2025810/1‑100
                                                                               GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGC                            >  2:3050300/1‑100
                                                                               GGATAAGGCGTTTACGCCGCATCCGCCAGCAGTTGCAATCCTCCTGGCCGGATACAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCG                           >  2:1351503/1‑100
                                                                                GATAAGGCGTTTACGCCGCATCCGCCAGCAGTTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGG                          >  2:145229/1‑100
                                                                                                 GCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCC          <  2:1362585/100‑1
                                                                                                     CCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGTGGCGTGAACGCCTTAT      >  2:575283/1‑100
                                                                                                     CCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTA       >  1:1492119/1‑99
                                                                                                     CCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTT        >  1:818550/1‑98
                                                                                                      CGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATC     <  1:867367/100‑1
                                                                                                       GCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCC    >  1:1313640/1‑100
                                                                                                         CCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  <  1:3164369/100‑1
                                                                                                         CCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  <  1:2833172/100‑1
                                                                                                         CCTACATGTGCAATCCTCCTGGACGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCTCCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  <  2:1679347/100‑1
                                                                                                                                                                                                             
TCCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3231357‑3231252
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  >  NC_000913/3231282‑3231380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.