New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4602165133 (1.030)19 (0.160) 11/164 NT 13.0% coding (694/771 nt) yjjP DUF1212 family inner membrane protein
?NC_000913 = 4602178 132 (1.110)coding (681/771 nt) yjjP DUF1212 family inner membrane protein
Rejected: Frequency below cutoff threshold.

CTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4602062‑4602165
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggcACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATCGAATT  <  NC_000913/4602178‑4602081
                                                                                                                                                                                                          
CTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGAC                                                                                                        >  2:2498887/1‑100
 TGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACT                                                                                                       >  2:3375866/1‑100
 TGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACT                                                                                                       >  1:1624124/1‑100
  GCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTG                                                                                                      >  1:1174244/1‑100
    GCCAACGCTAACAGAATTTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGC                                                                                                    <  1:1823322/100‑1
    GCCAACGCTAACAGAAATTCGATCACCCCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGC                                                                                                    <  1:1076356/100‑1
    GCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGC                                                                                                    >  2:38733/1‑100
     CCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGC                                                                                                    >  2:3293023/1‑99
               CAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGA                                                                                         >  1:2423836/1‑100
                   AATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTGAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGTGATCGC                                                                                     <  2:1748797/100‑1
                      TCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAG                                                                                  <  1:662706/100‑1
                       CGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGT                                                                                 <  2:2423820/100‑1
                        GATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTC                                                                                <  1:1496329/100‑1
                        GATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTC                                                                                <  1:2772863/100‑1
                          TCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTGCGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTG                                                                              <  2:2336326/100‑1
                          TCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTG                                                                              <  1:694197/100‑1
                          TCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTG                                                                              <  1:3009033/100‑1
                           atctCCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGC                                                                             <  2:3446322/96‑1
                           CACACCCATCCGCGTAGCCCCCAACTCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGC                                                                             <  1:1282141/100‑1
                           CACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGC                                                                             <  2:859368/100‑1
                           CACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGC                                                                             <  1:497837/100‑1
                           CACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGC                                                                             <  1:2015186/100‑1
                           CACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCAGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGC                                                                             >  2:2015175/1‑100
                            accCCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGCT                                                                            <  2:2482702/97‑1
                             CACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGCTG                                                                           <  1:1042629/100‑1
                             CACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGCTG                                                                           <  1:429070/100‑1
                               CCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGCACGCTGGGCGATCGCCAGTCTGCagat                                                                         >  1:3446347/1‑96
                                                                                                 gagTGGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGGTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGAT        <  2:71132/96‑1
                                                                                                 GACTGGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATC       <  2:1279941/100‑1
                                                                                                 GACTGGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATC       <  1:2623394/100‑1
                                                                                                  ACTGGCACGCTGGGAGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGCGGCTACGCGGATGGGTGTGATCG      <  2:1210454/100‑1
                                                                                                   CTGGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATCGA     >  1:3565435/1‑100
                                                                                                   CTGGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATC       <  2:452398/98‑1
                                                                                                     GGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATCGAAT   >  1:556470/1‑100
                                                                                                     GGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATAGCACTGACGCTTTGGGGGCTACGCGGATGGGTGTGATCGAAT   >  2:2562815/1‑100
                                                                                                      GCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATCGCATT  >  2:1660388/1‑100
                                                                                                      GCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATCGAATT  >  1:452631/1‑100
                                                                                                                                                                                                          
CTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATCGTCAGTGCCATCACTACGCCGACGCAGGTAGCCAGTGTCAGCAGACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4602062‑4602165
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggcACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGATGGGTGTGATCGAATT  <  NC_000913/4602178‑4602081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.