| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2730847 = | 0 (0.000) | 49 (0.410) | 11/164 | NT | 100% | noncoding (311/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4166946 | NA (NA) | noncoding (288/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
CATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCC > NC_000913/2730748‑2730946 | agaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctag > 1:2729782‑M1/100‑100 (MQ=255)agaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctag < 1:2944276‑M1/1‑1 (MQ=255)agaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctag < 1:2944080‑M1/1‑1 (MQ=255) gaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGc < 1:875851‑M1/2‑1 (MQ=255) gaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGc > 2:2604438‑M1/99‑100 (MQ=255) gaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGc < 2:1729751‑M1/2‑1 (MQ=255) gaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGc > 1:1682719‑M1/99‑100 (MQ=255) gaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGc > 1:1853057‑M1/99‑100 (MQ=255) gaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGc > 1:2021716‑M1/99‑100 (MQ=255) gaccaaagagggggaccttcgggcctcttgccagcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGc < 2:2184077‑M1/2‑1 (MQ=255) accaaagaggggggccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt < 2:1143251‑M1/3‑1 (MQ=255) accaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt > 1:503430‑M1/98‑100 (MQ=255) accaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt > 1:2676974‑M1/98‑100 (MQ=255) accaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt < 2:1725199‑M1/3‑1 (MQ=255) accaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt > 2:1927179‑M1/98‑100 (MQ=255) accaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt < 1:2900218‑M1/3‑1 (MQ=255) accaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt < 2:1047971‑M1/3‑1 (MQ=255) accaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt > 2:2846456‑M1/98‑100 (MQ=255) ccaaagagggggaccttcgggcctcttgccctcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCt > 2:1073386‑M1/97‑99 (MQ=255) ccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTg < 2:1070175‑M1/4‑1 (MQ=255) ccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTg < 1:2986472‑M1/4‑1 (MQ=255) ccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTg < 1:2769964‑M1/4‑1 (MQ=255) ccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTg < 1:3388289‑M1/4‑1 (MQ=255) ccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTg < 2:2352759‑M1/4‑1 (MQ=255) ccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTg > 1:1321375‑M1/97‑100 (MQ=255) caaagagggggaccttcgggcctcttgccatcggatgtgcccagctgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTgg < 2:751783‑M1/5‑1 (MQ=255) caaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTgg > 2:1118323‑M1/96‑100 (MQ=255) caaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTgg < 2:2142468‑M1/5‑1 (MQ=255) caaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTgg > 2:2434396‑M1/96‑100 (MQ=255) caaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTgg > 2:1046907‑M1/96‑100 (MQ=255) caaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTgg > 1:915406‑M1/96‑100 (MQ=255) aaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGt < 2:2703152‑M1/6‑1 (MQ=255) aaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGt < 2:2829398‑M1/6‑1 (MQ=255) aaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGt < 2:3473692‑M1/6‑1 (MQ=255) aaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGt > 2:560326‑M1/95‑100 (MQ=255) aaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGt < 1:1200234‑M1/6‑1 (MQ=255) aaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGt < 1:2423414‑M1/6‑1 (MQ=255) aaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGt < 1:3034835‑M1/6‑1 (MQ=255) aagagggggaccttcgggcctctttccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTc < 1:2944861‑M1/7‑1 (MQ=255) aagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTc > 1:3215007‑M1/94‑100 (MQ=255) aagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTc < 2:1112295‑M1/7‑1 (MQ=255) aagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTc < 1:2855838‑M1/7‑1 (MQ=255) aagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTc < 1:945925‑M1/7‑1 (MQ=255) aagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTc > 1:518419‑M1/94‑100 (MQ=255) aagagggggaccttcgcgcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTc > 2:2131206‑M1/94‑100 (MQ=255) gaccttcgggcctcttgccatcggctgtgcccagatgggattcgctagtaggtggggtaactgctcacctaggcgacgatccctaGCTGGTc > 2:2012167‑M1/86‑92 (MQ=255) ccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAg > 1:1249438‑M1/84‑100 (MQ=255) tcgggcctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGAcc > 1:781305‑M1/81‑100 (MQ=255) tcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGAcc > 1:453908‑M1/81‑100 (MQ=255) gggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAg > 2:2994550‑M1/79‑100 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGc > 2:1163804‑M1/78‑100 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGc > 2:2884159‑M1/78‑100 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGc > 2:2820993‑M1/78‑100 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGc > 2:3586667‑M1/78‑100 (MQ=255) gcctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCt > 1:1022439‑M1/77‑100 (MQ=255) gcctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCt > 2:570324‑M1/77‑100 (MQ=255) gcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGc > 2:743376‑M1/77‑99 (MQ=255) gcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCt > 1:260605‑M1/77‑100 (MQ=255) gcctcttgccatcagatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCt > 1:1884021‑M1/77‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 1:1410849‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 2:2930157‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 2:3126473‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 2:103524‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 1:122159‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 2:579386‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 1:2947596‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 2:1150941‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 1:846478‑M1/75‑100 (MQ=255) ctcttgccatcggatgtgcccagacgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 2:1839619‑M1/75‑100 (MQ=255) ctcttgccatcagatgtgcccagatgggattagctagtatgtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 1:862576‑M1/75‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagcttgttggtgtggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 2:2874760‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTTGTCATCCTCTCAGACCAGCTAgg > 2:778787‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 1:2719903‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 2:2878369‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatctctaGCTGGGCATCCTATCAGACCAGCTAg > 2:1699979‑M1/74‑99 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctcGCTGGTCATCCTCTCAGACCAGCTAgg > 2:729058‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGCCCAGCTAgg > 2:198270‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTa > 2:2152302‑M1/74‑98 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 2:986619‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 1:2388030‑M1/74‑100 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 1:1850699‑M1/74‑99 (MQ=255) tcttgccatcagatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 2:1580855‑M1/74‑100 (MQ=255) tcttgccatcagatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 1:1240051‑M1/74‑100 (MQ=255) cttggcatcagatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAg > 2:2477184‑M1/73‑98 (MQ=255) cttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAggg > 1:1650612‑M1/73‑100 (MQ=255) ttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGa > 2:2686552‑M1/72‑100 (MQ=255) ttgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGa > 1:2183610‑M1/72‑100 (MQ=255) ttgccatcggatgtgcccagatgggattagctagtaggtggtgtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAgg > 2:654752‑M1/72‑98 (MQ=255) ttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGa > 2:463568‑M1/72‑100 (MQ=255) ttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGa > 1:1956612‑M1/72‑100 (MQ=255) ttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGa > 2:2583350‑M1/72‑100 (MQ=255) tgccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGAt > 1:2811979‑M1/71‑100 (MQ=255) tgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctctcctaggcgacgatccctaGCGGGTCATCCTCTCAGACCAGCTAGGGAt > 1:1591119‑M1/71‑100 (MQ=255) ccatcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGAtcg > 1:2945400‑M1/69‑100 (MQ=255) catcggatgtgcccagatgggattagcttgttggtggggtaacggctcaccaaggcgacgatccctaGCTGGTCATCCTCTCAGACCAGCTAGGGAtcgt > 1:1653517‑M1/68‑100 (MQ=255) GCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc > 2:1965812‑M1/1‑100 (MQ=255) GCTGGTCATCCTCTCAGACCAGCTAGGGATAGTCGCCTTGGTGAGCCGTTACCCCACAAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc < 2:3416927‑M1/100‑1 (MQ=255) | CATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCC > NC_000913/2730748‑2730946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |