BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2835099 =	NA (NA)	15 (0.130)	7/164	NT	NA	noncoding (33/82 nt)	REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	3650712 =	NA (NA)	15 (0.130)	7/164	NT	NA	noncoding (1/100 nt)	RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 167 total aligned reads displayed.

CGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTA  >  NC_000913/2835001‑2835198

cGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCt                                                                                                    <  1:586184/100‑1 (MQ=255)

 ggATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCt                                                                                                    >  2:1115484/1‑99 (MQ=255)

 ggATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTa                                                                                                   >  2:1294078/1‑100 (MQ=255)

 ggATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTa                                                                                                   >  1:2036561/1‑100 (MQ=255)

 ggATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTa                                                                                                   >  2:2597110/1‑100 (MQ=255)

 ggATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTa                                                                                                   >  1:1569335/1‑100 (MQ=255)

          agGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGc                                                                                          <  1:2724147/100‑1 (MQ=255)

           ggCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCa                                                                                         <  1:1884407/100‑1 (MQ=255)

           ggCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCa                                                                                         <  1:28815/100‑1 (MQ=255)

           ggCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCa                                                                                         <  2:1521365/100‑1 (MQ=255)

             cATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCAtn                                                                                       <  2:1736924/100‑2 (MQ=255)

             cATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCAtg                                                                                       >  1:2245259/1‑100 (MQ=255)

                  ggATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAg                                                                                  >  1:2597018/1‑100 (MQ=255)

                     ttgttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGcc                                                                               <  2:3003393/100‑1 (MQ=255)

                     ttgttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGcc                                                                               <  1:2944396/100‑1 (MQ=255)

                      tgttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCTTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCg                                                                              <  2:1131048/100‑1 (MQ=255)

                       gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCgg                                                                             >  1:1982880/1‑100 (MQ=255)

                       gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCgg                                                                             >  2:1429184/1‑100 (MQ=255)

                         tgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGATGCTGGCGCTTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGa                                                                            <  1:740640/99‑1 (MQ=255)

                         tgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGAt                                                                           <  1:490748/100‑1 (MQ=255)

                          gAAAACATTGCCGATGTAGGTGGGCTAGGGTGCCTAAAATGTCGGATGGGACGCTGGCGGGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATa                                                                          <  2:1070271/100‑1 (MQ=25)

                            aaaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAg                                                                        <  1:3192040/100‑1 (MQ=255)

                             aaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAgg                                                                       >  2:236894/1‑100 (MQ=255)

                               cagtGCCGATGTGGGTGGGCGACTGTGCTGAAAATGTCGTATGGGACGCTGGTGCGTCTTATCCTATCTACGGGGACGCATGTGTAGGCCGGATAAGGCg                                                                     <  2:1285807/97‑1 (MQ=21)

                               cATTGCCGCTGTAGGTGTGCTACTGTGCCTAAAAGGTCGGATGCGACGCTGGCGCGTCTTATCCGCCCTACGGGGACGCATGTGTAGGCCGGATAAgg                                                                       <  2:3270759/98‑1 (MQ=25)

                                 ttGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGtt                                                                   >  1:58204/1‑100 (MQ=255)

                                  tGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGttt                                                                  <  2:1857629/100‑1 (MQ=255)

                                  tGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGAATGTGTAGGCCGGATAAGGCGttt                                                                  >  1:1940436/1‑100 (MQ=255)

                                   gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGttca                                                                 <  1:2473139/100‑3 (MQ=255)

                                   gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTa                                                                 <  1:630700/100‑1 (MQ=255)

                                   gCCGATGTAGGTGGGCTACTGGGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTAGGGGGACGCATGTGTAGGCAGGATAAGGCGttt                                                                  >  2:2153844/1‑99 (MQ=255)

                                     cGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcg                                                               >  1:3301090/1‑100 (MQ=255)

                                      gATGTAGGTGGGCTACTGTGCTTATATTGTCGGTTGCTATGCTGGCGCGTCTTATCCGACCTACGGGGACGTATGTGTAGGCCGGATAAGGCGTTTAc                                                                <  2:1495274/98‑1 (MQ=18)

                                      gATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgc                                                              >  1:3580548/1‑100 (MQ=255)

                                       aTGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                                                             <  1:224264/100‑1 (MQ=255)

                                       aTGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                                                             <  2:2380422/100‑1 (MQ=255)

                                         gTAGGTGGGCTAGTGTGCCTAAAGTGTCGGATGCGACGCTGGCGCGTCTTATCCGGCCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                                                             <  2:846500/98‑1 (MQ=255)

                                         gTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgccgc                                                           <  1:2115161/100‑1 (MQ=255)

                                          tAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                          >  2:1887011/1‑100 (MQ=255)

                                              tGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                       >  1:718887/1‑99 (MQ=255)

                                               gggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                     <  1:3233195/100‑1 (MQ=255)

                                               gggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                     >  1:3554818/1‑100 (MQ=255)

                                                ggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                    <  1:2721910/100‑1 (MQ=21)

                                                ggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                    <  2:1203304/100‑1 (MQ=255)

                                                ggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGAGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAGGCCGCATGCGGc                                                    >  2:937720/1‑100 (MQ=255)

                                                  cTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                  >  1:2160611/1‑100 (MQ=255)

                                                   tACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt                                                 >  2:2712251/1‑100 (MQ=255)

                                                    aCTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATg                                                >  1:103631/1‑100 (MQ=255)

                                                    aCTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATg                                                <  2:3606657/100‑1 (MQ=255)

                                                     cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                               <  1:30134/100‑1 (MQ=255)

                                                       gtgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGCCCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCAATGgtg                                             <  2:1982869/100‑1 (MQ=255)

                                                        tcccTAAAATGTCAGATGCGACGCTGGCGCGCCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtgt                                            >  1:2455566/3‑100 (MQ=255)

                                                         gCCTGAAATGACGAATGCCACGGCGCCGCGTCTTATCCGGTCGACACGGACTCCTGTGTAAGTCCGACAAGGCGTTTACGCCGCAGCTGTCAATGgtgac                                           <  2:2291262/100‑3 (MQ=255)

                                                          ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGTACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc                                          <  2:3188168/100‑1 (MQ=255)

                                                          ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCattttaggca                                          >  1:661998/1‑91 (MQ=255)

                                                          ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc                                          >  1:1618527/1‑100 (MQ=255)

                                                           cTAAAATGTCGGATGCGACGCTGGCGTGTCTTATCTGACCTACGGGGACGCATGGGGAGGCATGCTAAGGCGTGTACGCCGCATCCGGCAATGgtgt                                            >  2:3522097/1‑97 (MQ=18)

                                                           cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCa                                         >  1:657093/1‑100 (MQ=255)

                                                           cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCa                                         >  1:1201310/1‑100 (MQ=255)

                                                           cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCa                                         >  1:2887433/1‑100 (MQ=255)

                                                           cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTACa                                         >  2:899598/1‑100 (MQ=255)

                                                               aaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATg                                     >  2:3448182/1‑100 (MQ=255)

                                                                aggtcggataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGc                                    <  1:1762447‑M1/66‑1 (MQ=255)

                                                                aTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGc                                    <  2:163342/100‑1 (MQ=255)

                                                                    cGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAaca                                <  2:1905650/100‑1 (MQ=255)

                                                                     ggataagacgcgccagcgtcgcatccgacCTACGTGGACGCATGTGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCGATGGTGTCCAAATGCAacac                               <  2:556860‑M1/71‑1 (MQ=255)

                                                                     ggataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAacac                               <  1:1421426‑M1/71‑1 (MQ=255)

                                                                     ggataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAacac                               <  2:1133377‑M1/71‑1 (MQ=255)

                                                                     ggataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAacac                               <  1:3148649‑M1/71‑1 (MQ=255)

                                                                      gataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACg                              <  2:46403‑M1/72‑1 (MQ=255)

                                                                      gATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACg                              >  2:2768918/1‑100 (MQ=255)

                                                                       ataagacgcgccagcgtcttatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGt                             <  2:977089‑M1/73‑1 (MQ=255)

                                                                        tGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGtt                            >  1:1262930/1‑100 (MQ=255)

                                                                          cGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGtttt                          <  1:236894/100‑1 (MQ=255)

                                                                          cGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGtttt                          >  1:3392659/1‑100 (MQ=255)

                                                                          cGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGGAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGtttt                          <  1:1060940/100‑1 (MQ=255)

                                                                             cGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATc                       <  2:2300247/100‑1 (MQ=255)

                                                                               cgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCg                     <  2:2433738‑M1/81‑1 (MQ=255)

                                                                                 ggCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGtt                   >  1:935778/1‑100 (MQ=255)

                                                                                  gcgcGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTc                  >  1:900078/1‑100 (MQ=255)

                                                                                   cgcgTCTTATCCGACCTACGGGGACGCGTGGGTAGGGCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCt                 <  2:2281018/100‑1 (MQ=255)

                                                                                   cgcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCt                 >  2:3003210/1‑100 (MQ=255)

                                                                                    gcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTg                <  1:2841355/100‑1 (MQ=255)

                                                                                     cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg               >  2:2532595/1‑100 (MQ=255)

                                                                                     cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg               <  1:1398788/100‑1 (MQ=255)

                                                                                     cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg               <  2:2960181/100‑1 (MQ=255)

                                                                                       tCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGAc             >  1:1298819/1‑100 (MQ=255)

                                                                                        cTTATCCTGCCTACGGGGACGCATGTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGAc             <  2:3074301/99‑1 (MQ=255)

                                                                                         ttATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACtt           >  1:1113465/1‑100 (MQ=255)

                                                                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc          >  2:2070810/1‑100 (MQ=255)

                                                                                          tATCCGACCTACGGGGACGCATGTGTAAGACGGTTAAGGCGTTTACGCGGCATCGCGCAATGGTGGCAAAATGCAACACGTTTTATCCGTTCTGGCCTTc          >  1:1721233/1‑100 (MQ=25)

                                                                                           atccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCa         <  1:1532625‑M1/93‑1 (MQ=255)

                                                                                           atcagacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGGCCACATGCAAGACGTGTTATCCGTTCTGGACTTCa         <  2:3432756‑M1/93‑1 (MQ=255)

                                                                                             ccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAcc       <  2:1004770‑M1/95‑1 (MQ=255)

                                                                                               gacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCg     >  2:1678261‑M1/4‑100 (MQ=255)

                                                                                               gacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCg     >  2:2917784‑M1/4‑100 (MQ=255)

                                                                                                acCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGc    >  2:3163064‑M1/3‑100 (MQ=255)

                                                                                                 cCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCt   <  1:169352‑M1/99‑1 (MQ=255)

                                                                                                  cTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTa  >  2:1691720/1‑100 (MQ=255)

                                                                                                  cTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTa  >  1:1192902/1‑100 (MQ=255)

CGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTA  >  NC_000913/2835001‑2835198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.