BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3453931 =	139 (1.080)	25 (0.210)	11/162	NT	17.7%	coding (1468/1470 nt)	gspA	general secretory pathway component, cryptic
*	?	NC_000913	3453962 =	106 (0.900)	25 (0.210)	11/162	NT	17.7%	coding (1437/1470 nt)	gspA	general secretory pathway component, cryptic

Only 100 of 179 total aligned reads displayed.

AATTACATATATTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACTAACGTTGAAAA  >  NC_000913/3453832‑3454030

caccacttgaaaactgacggtgttgttggcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaata                                                                                                     <  1:1490756‑M1/1‑1 (MQ=255)

    aCATATATTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTc                                                                                                 >  1:522602/1‑100 (MQ=255)

    aCATATATTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTc                                                                                                 >  1:1977673/1‑100 (MQ=255)

     cATATATTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTcc                                                                                                <  2:507084/100‑1 (MQ=255)

     cATATATTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTcc                                                                                                <  2:3068185/100‑1 (MQ=255)

     cATATATTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTcc                                                                                                <  1:1928030/100‑1 (MQ=255)

      ttgaaaactgacggtgttgttggcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTccc                                                                                               >  1:90847‑M1/94‑100 (MQ=255)

       tgaaaactgacggtgttgttggcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTcccc                                                                                              <  2:975535‑M1/8‑1 (MQ=255)

       tatatTATGGTGCTGTGTTTTTGTTGGGAGAAGATACCAGGGTGACATGTTTCTTTCTTCTCTCGCGTGCCGATATAGATTTGAAACATGTCATTTc                                                                                                 >  2:243308/1‑97 (MQ=255)

       tatatTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTcccc                                                                                              >  2:1245889/1‑100 (MQ=255)

        atatTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCt                                                                                             <  1:1965730/100‑1 (MQ=255)

           ttatGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTc                                                                                           >  1:2996282/1‑99 (MQ=255)

            tatGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCAc                                                                                         <  1:1536894/100‑1 (MQ=255)

             atGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACt                                                                                        >  1:231233/1‑100 (MQ=255)

              tGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTCTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACtg                                                                                       <  2:3412935/100‑1 (MQ=255)

                gTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACtgtt                                                                                     >  1:2530737/1‑100 (MQ=255)

                  gCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACtgttgt                                                                                   >  1:203318/1‑100 (MQ=255)

                  gCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACtgttgt                                                                                   >  2:1029434/1‑100 (MQ=255)

                   cTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTgttgtt                                                                                  >  2:2505097/1‑100 (MQ=255)

                         ttttGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCggg                                                                            <  1:1691638/100‑1 (MQ=255)

                         ttggcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCggg                                                                            >  2:1391846‑M1/75‑100 (MQ=255)

                          tttGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCgggg                                                                           <  2:3468938/100‑1 (MQ=255)

                          tttGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCgggg                                                                           <  1:1825045/100‑1 (MQ=255)

                          tggcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCgggg                                                                           >  2:1668256‑M1/74‑100 (MQ=255)

                           ttGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGa                                                                          <  1:573284/100‑1 (MQ=255)

                           ggcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGa                                                                          >  2:1495590‑M1/73‑100 (MQ=255)

                           ggcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGa                                                                          >  1:1780106‑M1/73‑100 (MQ=255)

                            gcttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGaa                                                                         >  1:1022057‑M1/72‑100 (MQ=255)

                             gTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGaaa                                                                        <  2:2303846/100‑1 (MQ=255)

                             cttttcaacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGGTGTTTCCGGGGaaa                                                                        >  2:189892‑M1/71‑100 (MQ=255)

                             cttttcaacgttagtacagctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATGTCCCCTTCACTGTTGTTTCCGGGGaaa                                                                        >  1:816372‑M1/71‑100 (MQ=255)

                                gggAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAat                                                                       >  1:1464977/1‑98 (MQ=255)

                                 ggAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCCCTGTTGTTTCCGGGGCACTAtt                                                                    >  2:3009105/1‑100 (MQ=255)

                                  caacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATAttt                                                                   >  1:987198‑M1/66‑100 (MQ=255)

                                   agaagaTACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTg                                                                  >  1:1875755/1‑100 (MQ=255)

                                   aacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTg                                                                  >  1:1281473‑M1/65‑100 (MQ=255)

                                   aacgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTg                                                                  >  2:1128945‑M1/65‑100 (MQ=255)

                                   aacgttagtacatctctggcaggtgccaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTg                                                                  >  2:1779090‑M1/65‑100 (MQ=255)

                                    gaagaTACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTGCACTGTTGTTTCCGGGGAAATATTTGc                                                                 <  2:465930/100‑1 (MQ=255)

                                    acgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGc                                                                 >  1:3238235‑M1/64‑100 (MQ=255)

                                    acgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGc                                                                 >  1:3361320‑M1/64‑100 (MQ=255)

                                    acgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGc                                                                 >  2:277843‑M1/64‑100 (MQ=255)

                                     cgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCt                                                                >  1:1154729‑M1/63‑100 (MQ=255)

                                     cgttagtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCt                                                                >  1:13930‑M1/63‑100 (MQ=255)

                                      agaTACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCtt                                                               >  1:2894467/1‑100 (MQ=255)

                                        aTACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCa                                                             <  1:344332/100‑1 (MQ=255)

                                        aTACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCa                                                             <  1:1293915/100‑1 (MQ=255)

                                         tACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCAt                                                            >  2:9423/1‑100 (MQ=255)

                                         agtacatctctggcaggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTc                                                              >  1:243403‑M1/59‑98 (MQ=255)

                                         aaacAGGGAGCCCTGGTACGTTCTGCTCACGCCCGGCGATATAGAATTCAAACACGTCATTTCCCCTTCACTGTTGTTTCAGGGAAAATATTTGCTTCAt                                                            >  2:3111197/4‑100 (MQ=255)

                                          aCCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTTTTGTTTCCGGGAAAATATTTGCTTCATc                                                           >  2:2096375/1‑100 (MQ=255)

                                          aCCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAAATGTCATTTCCCCAACACTGTTGTTTCCGGGAAAATATTTGCTTCATc                                                           >  1:2169253/1‑100 (MQ=255)

                                            cAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCCCTGTTGTTTCCGGGGAAATATTTGCTTCATccc                                                         <  2:150100/100‑1 (MQ=255)

                                            cAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATccc                                                         >  1:752075/1‑100 (MQ=255)

                                            cAGGGTGACCTGTGTCTTTCTTCTCACTCGCGGCGATATAGAATGCAAAGATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATccc                                                         <  2:1970603/100‑1 (MQ=255)

                                              gggTGACGTGTGTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCAATGTTGTTTCCGGGGAAATATTTGCTTCATCCCGa                                                       >  2:1910316/1‑100 (MQ=255)

                                               ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGat                                                      <  1:937969/100‑1 (MQ=255)

                                               ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGat                                                      <  1:3466318/100‑1 (MQ=255)

                                                gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGata                                                     <  2:2264156/100‑1 (MQ=255)

                                                      tGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTa                                               >  2:2751141/1‑100 (MQ=255)

                                                      tGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTa                                               <  2:1189977/100‑1 (MQ=255)

                                                      tGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTa                                               >  1:351874/1‑100 (MQ=255)

                                                       gTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAg                                              >  2:1051507/1‑100 (MQ=255)

                                                        tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAgg                                             <  2:3223619/100‑1 (MQ=255)

                                                        tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAgg                                             <  2:587643/100‑1 (MQ=255)

                                                        tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAgg                                             >  1:1121379/1‑100 (MQ=255)

                                                        ggtggcaggggagagtgcctacttatatcgggatgaagcaaatATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAgg                                             >  1:779222‑M1/44‑100 (MQ=255)

                                                          tctttctGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCa                                           <  1:2059085/100‑1 (MQ=255)

                                                            tttctGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCAct                                         >  2:2895065/1‑100 (MQ=255)

                                                               ctGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACtctc                                      >  1:66342/1‑100 (MQ=255)

                                                                 gCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTccc                                    >  2:103333/1‑100 (MQ=255)

                                                                  cttgcgcgtgGCGATATAGAATCCAAACATGTCATTGCCCCTTCGCTGTTGTTTCCGGGGAAATATTTGCTGCATCCCGATATAAGTAGGCGCTCTcccc                                   <  2:1663152/96‑1 (MQ=255)

                                                                  cTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTcccc                                   >  1:2087702/1‑100 (MQ=255)

                                                                   tCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcct                                  >  1:795853/1‑100 (MQ=255)

                                                                   tCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcct                                  >  2:2726693/1‑100 (MQ=255)

                                                                    cACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCCTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcctg                                 >  1:2715051/1‑100 (MQ=255)

                                                                      cgcgcgGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcctgcc                               >  1:1857203/1‑100 (MQ=255)

                                                                      cgcgcgGCGATATAGAATTCAAACATGTCATATCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcctgc                                >  2:388694/1‑99 (MQ=255)

                                                                        cgaggcgATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcctgcc                               <  2:691772/95‑1 (MQ=255)

                                                                              gATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATCTTTGCTTCATCCCGATATAAGTAGGCACTCTCCcctgccacctgcca                       >  2:1584596/1‑100 (MQ=255)

                                                                              gATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcctgccacctgcca                       >  2:3497880/1‑100 (MQ=255)

                                                                              gATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTATTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCcctgccacctgc                         >  2:807564/1‑98 (MQ=255)

                                                                               atatAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCag                      <  1:2673695/100‑1 (MQ=255)

                                                                               atatAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCag                      <  2:3358129/100‑1 (MQ=255)

                                                                                 ataGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGTTTAATCCCGAATTAGTTAGGCCCTCCCCcctcccccctgcag                       >  1:650920/1‑95 (MQ=255)

                                                                                 ataGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCagag                    >  1:368990/1‑100 (MQ=255)

                                                                                  taGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGTGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAgaga                   >  2:1735864/1‑100 (MQ=255)

                                                                                  taGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAgaga                   <  1:1478227/100‑1 (MQ=255)

                                                                                    gAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATg                 <  1:3165556/100‑1 (MQ=255)

                                                                                     aaTTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGt                <  2:2351604/100‑1 (MQ=255)

                                                                                       ttCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTAc              <  2:1836299/100‑1 (MQ=255)

                                                                                        tCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACt             <  2:260100/100‑1 (MQ=255)

                                                                                        tCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACt             <  2:2366081/100‑1 (MQ=255)

                                                                                         cAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGACAAAGATGTACt             >  2:3153269/1‑99 (MQ=255)

                                                                                           aaCATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACTAAc          >  1:1142892/1‑100 (MQ=255)

                                                                                             cATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACTAACGt        <  1:1279578/100‑1 (MQ=255)

                                                                                              aTGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACTAACGtt       >  1:1099186/1‑100 (MQ=255)

                                                                                               tGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACTAACGTTg      <  2:2258327/100‑1 (MQ=255)

                                                                                                   ATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTGTCCCCTGCCACCTGCCAGAGATGTACTAACGTTGaaaa  <  1:3573590‑M1/100‑1 (MQ=255)

                                                                                                   ATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACTAACGTTGaaaa  <  1:914301‑M1/100‑1 (MQ=255)

AATTACATATATTATGGTGCTGTGTTTTTGTCGGGAGAAGATACCAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCGATATAAGTAGGCACTCTCCCCTGCCACCTGCCAGAGATGTACTAACGTTGAAAA  >  NC_000913/3453832‑3454030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.