BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3625629 =	NA (NA)	25 (0.210)	12/166	NT	17.9%	noncoding (41/82 nt)	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	3625675 =	115 (0.960)	25 (0.210)	12/166	NT	17.9%	intergenic (+161/+4)	yhhI/yhhJ	putative transposase/putative ABC transporter permease

Only 100 of 203 total aligned reads displayed.

AGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA  >  NC_000913/3625530‑3625728

tctggccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaataca                                                                                                     <  2:1708377‑M1/1‑1 (MQ=255)

aGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATaa                                                                                                     <  2:224868/100‑1 (MQ=255)

 ggACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGAGGTCAGTTCATAAACGCCTTCTCCGGCCTAAAAACAACTAAAATTCAATaa                                                                                                     >  2:3640708/1‑99 (MQ=255)

  tgtccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAAt                                                                                                   >  1:681973‑M1/98‑100 (MQ=255)

  gACTGAGTATCAAAAAGCCGGTTAACTGACACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAAt                                                                                                   <  2:3096208/100‑1 (MQ=255)

  gACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAAt                                                                                                   <  1:1771663/100‑1 (MQ=255)

   ggccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAAtt                                                                                                  <  2:630057‑M1/4‑1 (MQ=255)

   aCTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAAtt                                                                                                  >  2:1482151/1‑100 (MQ=255)

    gccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacagtggcgtaaatacAAtt                                                                                                  <  2:2038312‑M1/4‑1 (MQ=255)

    gccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTg                                                                                                 <  1:776526‑M1/5‑1 (MQ=255)

    cTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTg                                                                                                 >  1:3633114/1‑100 (MQ=255)

     ccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGc                                                                                                >  2:2730394‑M1/95‑100 (MQ=255)

      gAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCa                                                                                               >  1:407570/1‑100 (MQ=255)

      gAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCa                                                                                               <  1:187722/100‑1 (MQ=255)

      cgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacaatagat                                                                                               <  1:1340131‑M1/7‑5 (MQ=255)

        gTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAcc                                                                                             <  2:3192117/100‑1 (MQ=255)

        gTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAcc                                                                                             <  1:1239746/100‑1 (MQ=255)

         tATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATACGGACAAAAAACAACTAAAATTCAATAAATTGCACCg                                                                                            <  2:3010047/100‑1 (MQ=255)

          aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGa                                                                                           >  1:2564152/1‑100 (MQ=255)

            cAAAATGCCGGTTAACTGAAACTGTATAGGTTTGGTGTGTCAAGTCAAAAACGCCGTACCCGGCCTAAAAACAACTAAAATTATATTAAGAGCACCg                                                                                            <  2:2491118/97‑1 (MQ=255)

            cAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATg                                                                                         <  2:2643204/100‑1 (MQ=255)

             aaaaaGCCGGTTAACTGAAACTGTCCAGGGTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCGAAAAACAACTAAAATTCAATAAATTGCACCGAt                                                                                          <  2:2184536/98‑1 (MQ=255)

              aaaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCg                                                                                       <  1:2740812/100‑1 (MQ=255)

              aaaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCg                                                                                       >  2:2342676/1‑100 (MQ=255)

                  gCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt                                                                                   >  1:1839706/1‑100 (MQ=255)

                  gCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt                                                                                   >  1:2012341/1‑100 (MQ=255)

                     ggTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc                                                                                <  1:1471276/100‑1 (MQ=255)

                        tAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCtat                                                                             <  2:3382599/100‑1 (MQ=255)

                         aaCTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCtata                                                                            >  2:1249352/1‑100 (MQ=255)

                          aCTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa                                                                           >  2:698871/1‑100 (MQ=255)

                          aCTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa                                                                           >  1:3124787/1‑100 (MQ=255)

                          aCTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa                                                                           <  1:2523136/100‑1 (MQ=255)

                            tGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGc                                                                         >  1:2893573/1‑100 (MQ=255)

                            tGAAACTGTCCAGGGTTTGGGGGACAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTTCATATAAGc                                                                         >  2:918423/1‑100 (MQ=39)

                                  tGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACg                                                                    <  2:440659/99‑1 (MQ=255)

                                    tCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCAt                                                                 >  1:749623/1‑100 (MQ=255)

                                     cgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATc                                                                >  2:2713649‑M1/63‑100 (MQ=255)

                                      cAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCGATAAATTGCGCCGATTCGTAGTCCCTATAAACTTACGCATc                                                                >  2:2552005/1‑99 (MQ=255)

                                      cAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCg                                                               >  1:2056839/1‑100 (MQ=255)

                                      cAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCg                                                               <  1:2076209/100‑1 (MQ=255)

                                      cAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCg                                                               >  1:1995561/1‑100 (MQ=255)

                                       aGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCgg                                                              <  2:2772757/100‑1 (MQ=255)

                                        ggTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCggg                                                             <  1:1860601/100‑1 (MQ=255)

                                         tttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGc                                                            >  2:553154‑M1/59‑100 (MQ=255)

                                         tttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGc                                                            >  1:2917589‑M1/59‑100 (MQ=255)

                                          ttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa                                                           >  1:3198594‑M1/58‑100 (MQ=255)

                                          ttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa                                                           >  1:156239‑M1/58‑100 (MQ=255)

                                          ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa                                                           >  1:3026860/1‑100 (MQ=255)

                                          ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa                                                           >  2:1768964/1‑100 (MQ=255)

                                           tttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCaa                                                          >  2:2267734‑M1/57‑100 (MQ=255)

                                            ttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt                                                         >  2:2462846‑M1/56‑100 (MQ=255)

                                            ttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt                                                         >  1:1497469‑M1/56‑100 (MQ=255)

                                              gggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTg                                                       >  1:318118/1‑100 (MQ=255)

                                              gggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTg                                                       >  2:2757619/1‑100 (MQ=255)

                                              gggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTg                                                       >  1:3284358/1‑100 (MQ=255)

                                              gggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTAAGCATCGGACaa                                                          >  2:3204443/1‑97 (MQ=255)

                                              gggggTCAGTTCATAAACGCCTTATCAGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAATCCCTATAAGCTTACGCATCGGGCAAt                                                         >  2:1324444/1‑98 (MQ=255)

                                                gggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa                                                     >  2:2316908/1‑100 (MQ=255)

                                                 ggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt                                                    <  2:3284333/100‑1 (MQ=255)

                                                 cattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt                                                    >  1:1428279‑M1/51‑100 (MQ=255)

                                                     aGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTAc                                                >  1:2346197/1‑100 (MQ=255)

                                                     aGTTCATAAACGCCTTATCCGGCCTAAAAACAAATAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACACATCGGGCAATTGTa                                                     >  2:135096/1‑95 (MQ=255)

                                                       ttCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGc                                              <  1:1194642/100‑1 (MQ=255)

                                                       ttCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGc                                              <  1:820608/100‑1 (MQ=255)

                                                        tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc                                             <  2:1839697/100‑1 (MQ=255)

                                                        tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc                                             <  1:2768526/100‑1 (MQ=255)

                                                           tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCAtt                                          >  2:3451558/1‑100 (MQ=255)

                                                           tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCAtt                                          >  1:2985002/1‑100 (MQ=255)

                                                            aaaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg                                         <  2:1506395/100‑1 (MQ=255)

                                                            aaaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg                                         >  1:2255392/1‑100 (MQ=255)

                                                            aaaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg                                         >  1:2724000/1‑100 (MQ=255)

                                                             aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt                                        >  2:1587980/1‑100 (MQ=255)

                                                             aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt                                        >  1:1291687/1‑100 (MQ=255)

                                                                gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTTCACCGATACGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt                                        >  2:2910345/1‑97 (MQ=255)

                                                                gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTccc                                     <  2:1847931/100‑1 (MQ=255)

                                                                gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTccc                                     >  2:1165427/1‑100 (MQ=255)

                                                                gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTccc                                     >  1:2154576/1‑100 (MQ=255)

                                                                gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTccc                                     >  2:2677620/1‑100 (MQ=255)

                                                                  cTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCaa                                   <  2:3065796/100‑1 (MQ=255)

                                                                    tatacgcgcTAAAAACTACTAACATTCAATAACTTGCACCGATGCGTGTTGCGTATGCGCTTTCCCATAGCGCAGTTCTATTTACGCCATGGTAGCAATc                                 >  2:1934518/9‑100 (MQ=255)

                                                                     caatggCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCg                                <  1:2970816/96‑1 (MQ=255)

                                                                     aTCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCg                                >  2:106836/1‑100 (MQ=255)

                                                                        cgtccTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGt                               >  2:759544/4‑98 (MQ=255)

                                                                        cGGCCTAAAAACAACTAAAATTCAATAAATTGCCCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt                             <  1:962165/100‑1 (MQ=255)

                                                                        cGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTc                              <  2:531516/99‑1 (MQ=255)

                                                                         ggCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt                            >  2:587689/1‑100 (MQ=255)

                                                                           ncTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCGTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTTCCAATAGTCttac                          >  2:3514397/2‑98 (MQ=255)

                                                                             tAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTg                        >  1:3429614/1‑100 (MQ=255)

                                                                              aaaaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGa                       >  1:1625914/1‑100 (MQ=255)

                                                                                  acaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCg                   <  1:1733337/100‑1 (MQ=255)

                                                                                     acTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag                >  1:3324912/1‑100 (MQ=255)

                                                                                     acTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTCACGCCATTGTCCCAATCGTCTTCCTGAATCgcag                <  1:2384959/100‑1 (MQ=255)

                                                                                      cTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc               >  1:3089188/1‑100 (MQ=255)

                                                                                      cTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc               <  1:175006/100‑1 (MQ=255)

                                                                                        aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag             >  1:1136354/1‑100 (MQ=255)

                                                                                          aaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg           >  2:820824/1‑100 (MQ=255)

                                                                                             tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCACTTGCATTTACGCCATTTTCCCAATCTTCTTCCTGACTCTCagcagc            >  2:896462/1‑96 (MQ=255)

                                                                                              cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt       <  1:2952601/100‑1 (MQ=255)

                                                                                                aTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg     <  2:2577692/100‑1 (MQ=255)

                                                                                                 tAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTA‑TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg   <  1:549503/100‑1 (MQ=255)

AGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA  >  NC_000913/3625530‑3625728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.