New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4325806 =NA (NA)34 (0.290) 6/164 NT NA noncoding (5/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 4325838 = NA (NA)noncoding (37/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences

Only 100 of 267 total aligned reads displayed.

CATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGC  >  NC_000913/4325739‑4325937
                                                                                                   |                                                                                                   
 acaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAg                                                                                                    >  2:2635292‑M1/67‑100 (MQ=255)
  tgatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGt                                                                                                   >  2:2073202/1‑100 (MQ=255)
   aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaatggtgccgactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTc                                                                                                  >  1:1056725‑M1/65‑100 (MQ=255)
     tgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCgg                                                                                                <  1:3520391/100‑1 (MQ=255)
     tgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCgg                                                                                                >  1:2607519/1‑100 (MQ=255)
      ttcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaatggtgccgactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGc                                                                                               >  1:202599‑M1/62‑100 (MQ=255)
        cccgcgccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccaactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGc                                                                                               >  2:1161379‑M1/60‑98 (MQ=255)
        cccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCAc                                                                                             >  1:2577144‑M1/60‑100 (MQ=255)
        cccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccaactGCCTGATGCGACGCGCGAGCGTCGTATCAGgcagaca                                                                                                 <  1:327871‑M1/37‑4 (MQ=255)
           ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGt                                                                                          >  2:326827/1‑100 (MQ=255)
           ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGt                                                                                          >  1:1436344/1‑100 (MQ=255)
               aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc                                                                                      >  1:275322/1‑100 (MQ=255)
                gTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCg                                                                                     >  1:929518/1‑100 (MQ=255)
                gTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCg                                                                                     >  2:3620640/1‑100 (MQ=255)
                  tAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGa                                                                                   >  1:3176260/1‑100 (MQ=255)
                   aaGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGAt                                                                                  >  2:617233/1‑100 (MQ=255)
                    agagAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATg                                                                                 <  1:32266/100‑1 (MQ=255)
                     gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgc                                                                                <  1:1030984/100‑1 (MQ=255)
                       gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg                                                                              <  1:2859356/100‑1 (MQ=255)
                        aaGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggc                                                                             <  1:2059986/100‑1 (MQ=255)
                         aggcAGTTAAGTGTAGTTCGAAATTTATGCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggcg                                                                            <  1:776432/97‑1 (MQ=255)
                          gCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggcg                                                                            <  2:2983345/99‑1 (MQ=255)
                          gCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGt                                                                           >  1:1822603/1‑100 (MQ=255)
                               ttAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACg                                                                      <  1:2294138/100‑1 (MQ=255)
                                tAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGc                                                                     >  1:453063/1‑100 (MQ=255)
                                 aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATTCGGCGTAAACgtc                                                                    <  1:2453704/100‑3 (MQ=255)
                                 aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGcc                                                                    <  1:2540933/100‑1 (MQ=255)
                                 aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGcc                                                                    >  2:1537267/1‑100 (MQ=255)
                                  aGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCt                                                                   >  1:998534/1‑100 (MQ=255)
                                   gtgtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCtt                                                                  <  2:3065789/100‑1 (MQ=255)
                                     gtAGTGCGAAATTTATACAAATGAGAGTCGTCCTGATAAGACGCGCGATCGTCGCATCAGGCAGTCGGCACTGTGGCCGGATGCGGCGTAACCGCCTTAt                                                                <  2:3227866/100‑1 (MQ=18)
                                      tAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATc                                                               <  2:565820/100‑1 (MQ=255)
                                        gTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                             >  1:3163456/1‑100 (MQ=255)
                                           cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                          <  2:872419/100‑1 (MQ=255)
                                           cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATAAGGCGTTTACGCCGCATCCGGca                                                          <  2:1427954/100‑2 (MQ=21)
                                           cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAACGTCGCATCAGACAATCGGCAATGTTACCGGAAGCGACGAAAACACCTTATcc                                                              >  2:1095287/1‑96 (MQ=21)
                                            gAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                         >  2:824218/1‑100 (MQ=255)
                                            gAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                         >  1:2921609/1‑100 (MQ=255)
                                              aaTTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc                                                       <  2:1215790/100‑1 (MQ=255)
                                                    taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg                                                 <  2:3402353/100‑1 (MQ=255)
                                                      cAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTg                                               >  2:2447533/1‑100 (MQ=255)
                                                         aTGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgg                                            <  1:1718440/100‑1 (MQ=255)
                                                           gagaGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg                                           <  2:1735299/99‑1 (MQ=255)
                                                           gagaGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg                                           <  1:824224/99‑1 (MQ=255)
                                                           atctggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg                                           <  2:857724/95‑1 (MQ=255)
                                                            agagGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGaa                                         >  1:1777219/1‑100 (MQ=255)
                                                              tccgatcttgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt                                       <  1:9570‑M2/63‑1 (MQ=255)
                                                              cgactgcctgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt                                       >  1:3548010‑M2/38‑100 (MQ=255)
                                                              agGCGGCCTGATAAGGCGCGCGAGCGGCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt                                       <  2:1292213/100‑1 (MQ=255)
                                                              agGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt                                       <  1:612268/100‑1 (MQ=255)
                                                               ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt                                      >  1:119635/1‑100 (MQ=255)
                                                                 ctgcctgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGt                                    >  1:3543644‑M2/35‑100 (MQ=255)
                                                                 ctgcctgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt                                    >  1:3521529‑M2/35‑100 (MQ=255)
                                                                 ctgcctgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt                                    >  1:3607316‑M2/35‑100 (MQ=255)
                                                                 ctgcctgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGt                                    >  1:475539‑M2/35‑100 (MQ=255)
                                                                 ctgcctgatgcgacgctcgcgcgtcttatcaggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt                                    >  1:418040‑M2/35‑100 (MQ=255)
                                                                 cggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt                                    >  1:3344359/1‑100 (MQ=38)
                                                                  tgcctgatgcgacgcttgcgcgtcttatcaggcAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTa                                   >  1:2672605‑M2/34‑100 (MQ=255)
                                                                  ggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa                                   <  2:193775/100‑1 (MQ=35)
                                                                  ggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGTATTTGTa                                   >  1:3291349/1‑100 (MQ=255)
                                                                   gcctgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGt                                    >  1:769541‑M2/33‑98 (MQ=255)
                                                                   gcctgatgcgacgctcgcgcgtcttatcaggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg                                  >  2:154975‑M2/33‑100 (MQ=255)
                                                                   gcctgatgcgacgctcgcgcgtcttatcaggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCGACGGAGggggcgggagtgtggag                                  >  2:2384670‑M2/33‑92 (MQ=255)
                                                                   GCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg                                  <  2:399629‑M1/100‑1 (MQ=255)
                                                                   GCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg                                  >  1:3531232‑M1/1‑100 (MQ=255)
                                                                    CCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg                                 >  2:1468504‑M1/1‑100 (MQ=255)
                                                                     CTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc                                <  1:1737597‑M1/100‑1 (MQ=255)
                                                                      tgatgcgacgcttgcgcgtcttatcaggcAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGtgcgggaattagatcgga                               >  2:9570‑M2/30‑92 (MQ=255)
                                                                      TGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGAACTTGTAg                                  <  2:2932080‑M1/97‑1 (MQ=255)
                                                                       gatgcgacgcttgcgcgtcgcatcaggcAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt                              >  2:813054‑M2/29‑100 (MQ=255)
                                                                        ATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTg                             >  2:3006233‑M1/1‑100 (MQ=255)
                                                                        ATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTg                             >  2:965057‑M1/1‑100 (MQ=255)
                                                                        ATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTg                             >  2:1687070‑M1/1‑100 (MQ=255)
                                                                         TAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGa                            <  1:2131520‑M1/100‑1 (MQ=255)
                                                                          aaGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGAt                           <  2:387699/100‑1 (MQ=14)
                                                                           aGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa                          <  1:4096/100‑1 (MQ=38)
                                                                           aGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa                          <  1:3012905/100‑1 (MQ=38)
                                                                           aGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa                          >  2:3332435/1‑100 (MQ=38)
                                                                           aGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa                          <  2:1892037/100‑1 (MQ=38)
                                                                            ggcgcgcgcgcgtcgtatcaggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATaa                         <  2:1812900‑M2/77‑1 (MQ=255)
                                                                            gACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa                          <  2:769537/99‑1 (MQ=35)
                                                                              cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa                       >  1:1613625/1‑100 (MQ=38)
                                                                              cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa                       <  1:2346546/100‑1 (MQ=38)
                                                                              cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa                       <  1:1520406/100‑1 (MQ=38)
                                                                                   gatcGTCGCATCAGGCAGTCGGCACTGTTGCCGGTTGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcgct                   <  2:1646913/96‑2 (MQ=12)
                                                                                   gAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACgcgc                  <  1:2808229/100‑1 (MQ=35)
                                                                                    agggtggCATCAGGCTGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCa                 <  2:1164818/94‑1 (MQ=255)
                                                                                      cGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTTTCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAg               >  2:1577335/1‑100 (MQ=17)
                                                                                      cGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAg               >  1:1461789/1‑100 (MQ=32)
                                                                                       gTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCGTACGGGGGGTGCGGGAAGTTGTAGGCCTGTTAAGACGCGCaa                >  2:2684927/1‑98 (MQ=11)
                                                                                       gTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGc              >  2:590556/1‑100 (MQ=33)
                                                                                        tCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg             <  2:2142383/100‑1 (MQ=33)
                                                                                          gCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGGTTTGTAGGCCTGATAAGACGCGCAAGCGt            >  1:1333463/1‑99 (MQ=12)
                                                                                             tccggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCATGCGTCGc         <  1:1919397‑M2/93‑1 (MQ=255)
                                                                                                ggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa     <  2:280232‑M2/97‑1 (MQ=255)
                                                                                                 gcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACCGCGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAGGCGTCg          >  2:677200‑M2/3‑94 (MQ=255)
                                                                                                  cAGTCGGCACTTGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa     <  2:3153315‑M2/97‑1 (MQ=255)
                                                                                                  cAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg   <  1:1577343‑M2/99‑1 (MQ=255)
                                                                                                   aGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc  <  1:3108574/100‑1 (MQ=33)
                                                                                                   aGTCGGCACTGGTGCCGGATGGGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGTGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc  <  2:1972236/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGC  >  NC_000913/4325739‑4325937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.