| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,449,616 | C→G | 17.2% | G145A (GGG→GCG) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,449,616 | 0 | C | G | 17.2% | 401.0 / 69.2 | 156 | G145A (GGG→GCG) | yfcO | DUF2544 family putative outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (56/72); new base G (13/14); total (69/87) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 | |||||||||||
Only 100 of 165 total aligned reads displayed.
AGGGTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAACCT > NC_000913/2449517‑2449715 | gggTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGccc > 1:1010479/1‑100 (MQ=255) gTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCt > 2:3621524/1‑100 (MQ=255) tGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTg < 1:2518145/100‑1 (MQ=255) aGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGAt < 2:3492226/100‑1 (MQ=255) gCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACCGAAACGGATGGACCAATCGTGTCGTGAC‑TATCAGGCCCCTGAtc > 2:2514648/1‑99 (MQ=255) gCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATa > 2:789880/1‑100 (MQ=255) tttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGGGCCTGATA‑GTCAc < 1:436043/100‑1 (MQ=255) tttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCa < 1:1732054/100‑1 (MQ=255) tttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGGGACGTATCAGGGGCCTGATagtca < 2:1890675/100‑5 (MQ=255) tGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATGGTGTAGTGAC‑TATCAGACCCCTGATACGTCACg > 2:354074/1‑100 (MQ=255) tGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATA‑GTCAc < 1:298679/99‑1 (MQ=38) cTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATA‑GTCACgaca < 1:2024176/100‑4 (MQ=37) cTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAAACGTGTCGTGACGTAGCAGGAGCCTGATA‑GTCACgaca < 2:148259/100‑4 (MQ=37) ttACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATA‑GTCACgacac < 1:666110/100‑5 (MQ=37) ttACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATA‑GTCACgacac < 2:1120376/100‑5 (MQ=25) tACTGACCTAATTCTCATTCCATGAAACGTCATAATGTTGAACAGACACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATA‑GTCACgacacg < 1:1499321/100‑6 (MQ=21) tACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑ccccc > 2:2567986/1‑100 (MQ=255) cTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGCAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTg > 2:150323/1‑100 (MQ=255) cTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTg > 1:794600/1‑100 (MQ=255) gACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGga > 1:530225/1‑100 (MQ=255) gACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGga > 1:271029/1‑100 (MQ=255) aCATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑TCCCCTGgag > 2:2766639/1‑100 (MQ=255) cATAATTCTCATTCCATGACACGTCATAATGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGgag < 2:720289/99‑1 (MQ=255) cATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGgag > 1:288171/1‑99 (MQ=255) aTAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGagag < 1:411752/100‑1 (MQ=255) tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAgg > 1:2304457/1‑100 (MQ=255) aaTTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAgg > 1:2868589/1‑99 (MQ=255) aaTTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGc < 1:3502928/100‑1 (MQ=255) ttCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGAGGCtt < 2:1204232/100‑1 (MQ=38) tctcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTc < 2:1664180/100‑1 (MQ=255) ctcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCa > 1:1534484/1‑100 (MQ=255) ctcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCa < 1:789885/100‑1 (MQ=255) tcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCag < 2:2954087/100‑1 (MQ=255) cATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCGCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCcga > 2:1010930/1‑100 (MQ=255) cATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCaga < 2:1198061/100‑1 (MQ=255) cATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCaga > 2:2012709/1‑100 (MQ=255) aTTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCagag < 2:2827653/100‑1 (MQ=255) aTTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCagag > 2:827780/1‑100 (MQ=255) ccATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtca < 2:848678/100‑1 (MQ=255) ccATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtca < 2:3232649/100‑1 (MQ=255) cATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCagagggcg > 1:2232281/1‑96 (MQ=255) cATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcat > 1:2699657/1‑100 (MQ=255) cATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcat > 1:2169487/1‑100 (MQ=255) aTGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcatt < 1:1520324/100‑1 (MQ=255) aTGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcatt < 1:2278413/100‑1 (MQ=255) aTGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcat > 2:3468288/1‑99 (MQ=255) aTGAAACGTCATAAGGTCGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATGAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcatt > 2:2386500/1‑100 (MQ=255) tgcaaCGTCATAAGGTTGACCAGAAAAGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcatt < 1:3644323/96‑1 (MQ=255) aaaCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcattcat < 1:3329049/100‑1 (MQ=255) aaaCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGtcattcat < 2:1931304/100‑1 (MQ=255) cGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCataat < 1:3508339/100‑1 (MQ=255) cATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATaac < 1:3046308/100‑1 (MQ=255) aTAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATaacc > 1:1896304/1‑100 (MQ=255) aTAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCACCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATaac < 2:3262659/99‑1 (MQ=255) tAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATaacca > 1:3545184/1‑100 (MQ=255) tAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATaacca < 1:2599526/100‑1 (MQ=255) aGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATaaccaac < 2:3113651/100‑1 (MQ=255) gatctaaCAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATaaccaacc < 2:1940897/95‑1 (MQ=255) gTTGAACAGAAACGGATGGACAAATCGTGTCGTGAA‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGGGGCTTCAGAGTCATTCATAATAaccaacca > 1:3208648/1‑100 (MQ=255) tGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGTAGAGGCTTCAGAGTCATTCATAATAACCAACCAt < 2:583827/99‑1 (MQ=255) gAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATgg > 1:2456017/1‑100 (MQ=255) gAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATgg < 1:438991/100‑1 (MQ=255) aaCAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAaccaaccagatc > 1:1940907/1‑96 (MQ=255) aaCAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGa > 1:1151813/1‑100 (MQ=255) gAAACGGATGGACAAATCGTGTCGTGCC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGaaaa > 2:865302/1‑99 (MQ=255) gAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAg > 2:1708398/1‑100 (MQ=255) gAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAg < 2:1337530/100‑1 (MQ=255) cGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGaaaa > 2:2708307/1‑100 (MQ=255) ggATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAGCCAACCATGGACAAGAAAAg < 2:2224440/100‑1 (MQ=255) ggATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAg < 2:1462876/100‑1 (MQ=255) ggACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAg < 2:1298576/100‑1 (MQ=255) gACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACGCCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAg > 2:3388504/1‑100 (MQ=255) gACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa < 2:1010472/100‑1 (MQ=255) aCAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGAt < 1:3575/100‑1 (MQ=255) aaTCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCa > 1:177584/1‑100 (MQ=255) tcgtgtcgtgAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAt < 1:836050/100‑1 (MQ=255) gggggcgtgACGTATCAGGGGCCTGATA‑GTCACG‑CCGCCTGGAGAGGCTTCAGAGTCATACATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc > 2:52792/6‑100 (MQ=25) gtgttgtgAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc < 1:1807694/99‑1 (MQ=255) gtcgtgAC‑TATCAGGCCCCCGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAAACAACCATGGACAAGAAAAGTAAGATTCAATctct < 1:1145241/100‑1 (MQ=255) ggcgtgACGTATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATctct > 1:1029726/3‑100 (MQ=37) ggcgtgACGTATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATctct > 1:2574354/3‑100 (MQ=37) tcgtgAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTg < 2:444730/100‑1 (MQ=255) gcgtgACGTATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGAGGCTTCAGCGTCATTCATAATAACCCACCATGGACACGAAAAGTAAGACTCAATCTCTg > 2:1533340/2‑100 (MQ=25) cgtgACGTATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGCGGCTTCAGAGCCATTGATACTCCCCAACCAGGAACACGAAAAGTAAGATTCAAtctc > 2:3510698/1‑97 (MQ=16) cgtgACGTATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTgt > 1:3070965/1‑99 (MQ=37) cgtgACGTATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc > 1:1741671/1‑100 (MQ=38) cgtgAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc < 1:298870/100‑1 (MQ=255) cgtgAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc > 1:1642467/1‑100 (MQ=255) gtgacgtATCAGGGGCCTGATA‑GTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCa > 1:339017/7‑100 (MQ=38) tgAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCag > 1:3255970/1‑100 (MQ=255) tgAC‑TATCAGGCCCATGATACGTCACG‑CCCCCTGGAGAGGCATCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCag < 2:3634879/100‑1 (MQ=255) tATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGAc < 1:2346382/100‑1 (MQ=255) aTCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACa < 1:3621551/100‑1 (MQ=255) aTCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACa < 2:3310599/100‑1 (MQ=255) cAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAAt > 1:316198/1‑100 (MQ=255) aGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATa < 2:2201179/100‑1 (MQ=255) ccccTGATACGTCACG‑TCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAAcc < 1:2766657/100‑1 (MQ=255) ccccTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAAcc > 1:294567/1‑100 (MQ=255) ccccTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGACTCATTCATAATAAACAACCATGGACAAGAAAAGTAAGATTCAATATCTACACAGACAAGAAc > 2:3184315/1‑99 (MQ=255) cccTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAACCt < 1:2383794/100‑1 (MQ=255) | AGGGTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGAC‑TATCAGGCCCCTGATACGTCACG‑CCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAACCT > NC_000913/2449517‑2449715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |