| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 41.3% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 41.3% | 281.1 / inf | 242 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (70/72); new base G (89/11); total (159/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.94e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.29e-02 | |||||||||||
Only 100 of 245 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1709789/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGCCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:519938/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCTGCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCTGATAAGGTGTTAACGCCGCATCCgg < 2:1614414/99‑1 (MQ=25) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:1683930/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:743460/100‑3 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑a < 1:2517435/100‑1 (MQ=25) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑Ac > 1:1625871/1‑100 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a < 2:1529982/100‑1 (MQ=255) gCACGCAGAGGCACAGCGCCATCGGGTAGACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaaag < 2:2831839/100‑11 (MQ=18) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 2:2057814/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 1:2295274/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg > 2:613041/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:1370036/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 2:3582598/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCa < 1:206555/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 2:3524788/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 1:3035695/99‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 1:3140673/1‑100 (MQ=255) gcaGCGCCATCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCaa > 1:3643810/2‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:310388/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:671520/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCTGCCT‑‑AC‑AAAATCGTGCAAATTCAATa < 1:2219017/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATAc > 1:2019660/1‑100 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACa < 1:213036/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAt > 1:134892/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt > 1:950880/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg < 1:3361132/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑t > 1:2943577/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCg < 2:647631/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCg < 1:3068839/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCg > 1:1918879/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCg < 1:1469346/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTa > 2:3064913/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTa > 2:3407641/1‑100 (MQ=255) gcataaaCAAAGCGCACTTCGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAgg > 2:1160602/7‑100 (MQ=18) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGcc < 1:3311824/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGcc < 1:2983164/100‑1 (MQ=255) ataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGcc > 1:2819664/5‑100 (MQ=18) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCt < 2:1056185/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTg > 1:355915/1‑100 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGc < 1:3213095/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGAA‑GAAT‑T‑TTCGTGGGACTGATatg > 2:3579623/1‑97 (MQ=17) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCg > 1:115850/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCg < 2:1865346/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCgg < 1:2445447/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGa < 1:805363/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGCCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGACCTGATAAGCgg < 2:2551137/98‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAgcg > 1:446404/1‑100 (MQ=255) agttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAAAC‑AAAACTGTGCAAATTCAATATATTGCA‑GGAA‑A‑CACGTAGGCCTGATAAGCGAAg > 2:754061/11‑100 (MQ=2) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAgcgc > 2:328768/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCa > 1:1578042/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCa > 1:1692890/1‑100 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑CTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2192925/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCT‑T‑CTGGTAGGCCTGATAAGCATCGCGCATCAg > 2:2763245/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑CTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:3458623/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑TTGGTAGGCCTGATAAGCGCAGCGCATCAgg > 1:2786673/4‑100 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCTGGCCT‑‑AC‑AAATTCTTCCAAATTCAATATATTGCA‑GAAA‑T‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1822416/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAACATATTGCA‑‑ATTCT‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:861865/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCT‑T‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGc > 2:488448/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCAGGGAC‑T‑AT‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 1:1032579/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCAGGGAC‑T‑AT‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 1:549715/3‑100 (MQ=18) ggtcggataaggcgTTCACGCCGCATCCGACCC‑‑AC‑AAAGTCTTGCAAAATCAATAAATTGCA‑GGAA‑C‑GATGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2149564/11‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:1847174/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2437847/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCATGAAAATTCAATACATTGCA‑AGAT‑T‑TTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:145228/2‑100 (MQ=17) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1986198/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAgaga > 1:287876/1‑96 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:2222745/1‑100 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCT‑T‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGCaag > 1:1770171/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:2357918/9‑98 (MQ=17) cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:1821163/8‑99 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑CACGTATGCCTGATAAGCGTAGAGCATCAGGCa > 1:1318405/8‑97 (MQ=17) cggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:1945411/8‑100 (MQ=17) cGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 2:2670477/100‑1 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAAT‑CCCTTGTAGGCCTGATAAGCGTAGCGCATCAGCCAtttgc > 2:694816/7‑98 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1127222/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCT‑T‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGCaagct > 1:997406/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1726801/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2485018/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGAAgttt > 1:3546941/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCATGAAAATTCAATACATTGCA‑AGAT‑T‑TTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 1:1778313/7‑96 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 1:2710035/6‑100 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCATGAAAATTCAATACATTGCA‑AGAT‑T‑TTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacgctc > 1:3251252/6‑95 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttg > 1:123204/6‑99 (MQ=18) gataaggcgTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 1:1550911/6‑100 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1065965/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2571908/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcn < 2:135915/100‑2 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:1505022/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:3140650/100‑1 (MQ=255) tAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:3407666/100‑1 (MQ=255) tAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:620544/1‑100 (MQ=255) aaCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑C‑TTCGTAGGCCTGATAAGCGGATCGCATCAGGCATTtttgcctttgtcct > 2:2211785/1‑96 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 1:672270/1‑100 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1957047/100‑1 (MQ=255) cGCCTTATCCGGCCT‑‑AC‑AAGATCGTGAAAATTCAATACATTGCA‑GCAT‑T‑TTCGTAGGCCGGATCAGCGGAACGCATTAGGCATTtttgcctttggta > 2:3022143/1‑94 (MQ=17) cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 2:3341122/1‑99 (MQ=255) gCCTTATCCGGCGT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:1266239/100‑1 (MQ=255) ttATCCGGCTT‑‑AC‑AAAATCGTGCAAATTCAATAAATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCAATCAGTCt < 2:1240889/100‑1 (MQ=255) ttATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:1135717/100‑1 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |