Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,679,430 Δ1 bp 15.2% intergenic (‑63/+34) yphF ← / ← yphG putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,679,4300G.15.2% 579.4 / 103.2 197intergenic (‑63/+34)yphF/yphGputative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein
Reads supporting (aligned to +/- strand):  ref base G (85/81);  new base . (17/13);  total (102/95)
Fisher's exact test for biased strand distribution p-value = 6.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.27e-03

Only 100 of 206 total aligned reads displayed.

ATAATAGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGG  >  NC_000913/2679331‑2679529
                                                                                                   |                                                                                                    
ataataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAg                                                                                                      <  2:2678083/100‑1 (MQ=255)
  aataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAgcg                                                                                                    >  2:3614395/1‑100 (MQ=255)
   ataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAgcgc                                                                                                   >  1:490651/1‑100 (MQ=255)
   ataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAgcgc                                                                                                   >  2:1838821/1‑100 (MQ=255)
    taGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGcgcg                                                                                                  <  1:532887/100‑1 (MQ=255)
      gATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTg                                                                                               >  1:3453855/1‑100 (MQ=255)
       aTTACGGGTTGTTCTCATTTTTTTTTTTATTTAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGTGCGGCAGCGCGTGc                                                                                              >  1:3610/1‑100 (MQ=255)
       aTTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTg                                                                                               >  1:1520212/1‑99 (MQ=255)
       aTTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGc                                                                                              >  1:2171149/1‑100 (MQ=255)
        ttACGGGTTGTTCTCATTTTTGTAGGCATAGAGTCTCCTGTATGGTTTTTATTAACACCGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGcc                                                                                             <  1:1931297/100‑1 (MQ=255)
        ttACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGcc                                                                                             <  2:538014/100‑1 (MQ=255)
          aCGGGTTGTTCTCATTTTTGTAAGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGc                                                                                           <  1:3374571/100‑1 (MQ=255)
              gttgttCTCATTTTTGTATGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCat                                                                                       <  1:827899/100‑2 (MQ=255)
              gttgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCaa                                                                                       <  2:4255287/100‑1 (MQ=255)
              gttgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCat                                                                                       <  1:1194649/100‑2 (MQ=255)
               ttgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCaaa                                                                                      >  2:4160042/1‑100 (MQ=255)
               ttgtgCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCaaa                                                                                      <  1:310744/100‑1 (MQ=255)
                tgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAat                                                                                     >  2:2127661/1‑100 (MQ=255)
                tgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCatca                                                                                     <  2:2362792/100‑4 (MQ=39)
                 gttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCatcac                                                                                    <  2:3345838/100‑5 (MQ=38)
                 gttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCatcac                                                                                    <  2:2066954/100‑5 (MQ=38)
                 gttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCatcac                                                                                    <  1:4060629/100‑5 (MQ=38)
                 gttCTCATTTTTGTAGGCATAAAGCCTCCTGTAGGGTTTTTATTAACAACGTCTTATTCTAATTATATTGTGATGAGCGGCAGCGCGTGCCGCTCAAata                                                                                    >  1:1660097/1‑100 (MQ=255)
                  ttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCatcaca                                                                                   <  2:1476390/100‑6 (MQ=38)
                  ttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCACGCGCTGCCGCTCatcaca                                                                                   <  2:2880378/100‑6 (MQ=38)
                   tctcATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATAtt                                                                                  >  1:1708913/1‑100 (MQ=255)
                     tcATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTAc                                                                                <  1:2602884/100‑1 (MQ=255)
                     tcATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTAc                                                                                <  2:1233770/100‑1 (MQ=255)
                     tcATTTTTGTAGGAATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGAAGAGCGGCAGCGCGTGCCTCTCAAAGATTAc                                                                                <  1:855993/100‑1 (MQ=255)
                      cATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACa                                                                               >  1:3633837/1‑100 (MQ=255)
                       aTTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAg                                                                              <  2:2033796/100‑1 (MQ=255)
                       aTTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAg                                                                              <  1:1117545/100‑1 (MQ=255)
                       aTTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAg                                                                              <  1:1804513/100‑1 (MQ=255)
                        tttttGTAGGCATAGAGCCTCCTGTAGGGTTTTTATAAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGt                                                                             >  2:3097767/1‑100 (MQ=255)
                         ttttGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGtt                                                                            >  2:161075/1‑100 (MQ=255)
                               aGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGAGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAgg                                                                      >  1:3312386/1‑100 (MQ=255)
                                ngCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAggg                                                                     >  1:3539489/2‑100 (MQ=255)
                                ggCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAggg                                                                     <  2:2814539/100‑1 (MQ=255)
                                ggCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAggg                                                                     >  1:3813301/1‑100 (MQ=255)
                                 gCATAGAGCCTCCTGTAGGGTTTTTATTAGCAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGt                                                                    <  1:3174422/100‑1 (MQ=255)
                                  cATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGtt                                                                   >  2:3441053/1‑100 (MQ=255)
                                  cATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGtt                                                                   >  2:2275482/1‑100 (MQ=255)
                                    tAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTa                                                                 >  2:908263/1‑100 (MQ=255)
                                    tAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCACTCAAATATTACAGTTAATAGGGTTTa                                                                 >  2:2436628/1‑100 (MQ=255)
                                        gCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGa                                                             >  1:635538/1‑100 (MQ=255)
                                         cctcctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGan                                                            <  1:4366073/100‑2 (MQ=255)
                                         cctcctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGaa                                                            <  1:3150294/100‑1 (MQ=255)
                                          ctcctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAAc                                                           <  1:2779456/100‑1 (MQ=255)
                                            cctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAAcgc                                                         <  2:1344884/100‑1 (MQ=255)
                                               gTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGt                                                      <  2:939543/100‑1 (MQ=255)
                                               gTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGt                                                      >  2:823560/1‑100 (MQ=255)
                                               gTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCGCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGt                                                      <  1:3034922/100‑1 (MQ=255)
                                                tAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGtt                                                     <  2:3633858/100‑1 (MQ=255)
                                                     tttttATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTGCAGTTAATAGGGTTTAGTGAACGCGGTTaaaaa                                                <  2:1124581/100‑1 (MQ=255)
                                                     tttttATTAACAACGGCTTATTCTAATTACTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTGCAGTTAATAGGGTTTAGTGAACGCGGTTaaaaa                                                <  1:2645865/100‑1 (MQ=255)
                                                       tttATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATa                                              >  2:794649/1‑100 (MQ=255)
                                                       tttATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATa                                              <  2:3709911/100‑1 (MQ=255)
                                                           ttaACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAg                                          >  2:4237999/1‑100 (MQ=255)
                                                           ttaACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAg                                          <  2:500413/100‑1 (MQ=255)
                                                             aacaacGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCTCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGc                                        <  1:2255926/100‑1 (MQ=255)
                                                              acactggCTTATTCTAATGATTTTGTGATGAGCGGCAACGCGGGTCGCTGAAATATAACAGTTAATAGTGTTTAGTGAACGCGGTTaaaaa                                                <  1:726741/86‑1 (MQ=255)
                                                              acaacGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCa                                       >  1:327940/1‑100 (MQ=255)
                                                               caacGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCAt                                      >  2:4295333/1‑100 (MQ=255)
                                                                     cTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACggt                                >  2:1035539/1‑100 (MQ=255)
                                                                      ttATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACggtg                               <  2:2483367/100‑1 (MQ=255)
                                                                        aTTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACggtggt                             <  2:1737614/100‑1 (MQ=255)
                                                                         ttCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGgtggtg                            <  2:4344162/100‑1 (MQ=255)
                                                                         ttCTAATTATTTTGGGATTAGCGGCAGCGCTTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGATTAAAAATAAAAGGCATCACggtggt                             <  1:1676784/99‑1 (MQ=255)
                                                                          tCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGa                           >  1:3121535/1‑100 (MQ=255)
                                                                           cTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaa                          >  1:2415346/1‑100 (MQ=255)
                                                                            tAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaat                         <  2:4056552/100‑1 (MQ=255)
                                                                            tAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaat                         <  1:3245964/100‑1 (MQ=255)
                                                                            tAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaat                         <  2:1315405/100‑1 (MQ=255)
                                                                              attattTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaataa                       >  1:1006866/1‑100 (MQ=255)
                                                                                 attTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGc                    >  1:4183390/1‑100 (MQ=255)
                                                                                      tatttgaGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCtt               >  1:3667250/5‑100 (MQ=38)
                                                                                      gtgATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCtt               >  1:2923845/1‑100 (MQ=255)
                                                                                       atttgaGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCttt              >  1:3937529/4‑100 (MQ=39)
                                                                                       atttgaGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCttt              >  2:3464271/4‑100 (MQ=39)
                                                                                        tttgaGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCATTc             >  1:1428611/3‑100 (MQ=255)
                                                                                        gatgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTc             >  1:2205381/1‑100 (MQ=255)
                                                                                        gatgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTc             >  1:3308726/1‑100 (MQ=255)
                                                                                        gatgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTc             >  2:302193/1‑100 (MQ=255)
                                                                                         ttgaGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCg            >  1:1547337/2‑100 (MQ=255)
                                                                                          tgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  2:2415357/100‑1 (MQ=255)
                                                                                          tgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  1:139100/100‑1 (MQ=255)
                                                                                          tgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           >  1:3795967/1‑100 (MQ=255)
                                                                                          tgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  2:3380125/100‑1 (MQ=255)
                                                                                          tgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCAGCTTTCgg           >  1:2578332/1‑100 (MQ=255)
                                                                                          tgaGCGGCAGAGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAACAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  1:2897156/100‑1 (MQ=255)
                                                                                          tgaGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           >  2:2041427/1‑100 (MQ=255)
                                                                                          tgaGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           >  1:4206164/1‑100 (MQ=255)
                                                                                            aGCGGCACGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGcc         >  1:1971053/1‑100 (MQ=255)
                                                                                             gcagCAGCGCGTGCTGATCAAATATTACAGTTAATAGGGTGTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGc          <  1:1249988/95‑1 (MQ=255)
                                                                                             gCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCa        <  2:355569/100‑1 (MQ=255)
                                                                                             gCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCa        >  2:2616779/1‑100 (MQ=255)
                                                                                              cGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCaa       <  2:1857177/100‑1 (MQ=255)
                                                                                                 cAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGcc    <  2:3929726/100‑1 (MQ=255)
                                                                                                  aGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCg   >  2:3251961/1‑100 (MQ=255)
                                                                                                   gcgcGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCgg  <  1:962606/100‑1 (MQ=255)
                                                                                                   |                                                                                                    
ATAATAGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGG  >  NC_000913/2679331‑2679529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: