New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1269694120 (0.760)17 (0.120) 6/166 NT 17.2% intergenic (‑419/+9) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small
?NC_000913 = 1270193 52 (0.350)intergenic (‑383/+45) ldrB/ldrC toxic polypeptide, small/toxic polypeptide, small

TGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269590‑1269694
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGCAC  <  NC_000913/1270193‑1270096
                                                                                                                                                                                                           
TGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAC                                                                                                         >  1:3713762/1‑100
TGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAC                                                                                                         >  2:49859/1‑100
 GCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG                                                                                                        >  2:4160591/1‑100
 GCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG                                                                                                        >  2:2444834/1‑100
 GCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG                                                                                                        >  2:855980/1‑100
 GCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG                                                                                                        >  1:2556408/1‑100
  CCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGC                                                                                                       >  2:1875497/1‑100
  CCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGC                                                                                                       >  1:3459641/1‑100
  CCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGC                                                                                                       >  2:2656388/1‑100
  CCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGC                                                                                                       >  2:2811662/1‑100
   CAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCC                                                                                                      >  1:4044159/1‑100
   CAATATTTACTTGTGGAAGTGAAAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGC                                                                                                       >  1:2556309/1‑99
   CAATATTAACTAGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCC                                                                                                      >  1:2302043/1‑100
     ATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG                                                                                                    <  2:1281546/100‑1
     ATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG                                                                                                    <  2:3131598/100‑1
                                                              CCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAG                                           >  2:3329593/1‑100
                                                               nGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGT                                          >  2:2071080/2‑100
                                                                GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGCAACCGGCCGCAGGGGTACCAGCCCGCGGCCATTTTTGTCCTTATCTCTTCCACAAGTA                                         >  1:41954/1‑100
                                                                GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGGCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTA                                         >  2:3096590/1‑100
                                                                GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTA                                         >  2:3758878/1‑100
                                                                GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCCCAAGTA                                         >  1:217509/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAGCCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  1:1504279/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAA                                        >  2:3494406/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAA                                        >  1:358226/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  2:3951834/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  2:4021869/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  1:1028250/1‑100
                                                                  TTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAA                                       >  1:1879900/1‑100
                                                                     CGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATAT                                    >  1:1087523/1‑100
                                                                     CGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATAT                                    >  2:2188934/1‑100
                                                                     CGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTATTTATCACTTCCACAAGTAAATAT                                    >  2:937670/1‑100
                                                                      GGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATT                                   >  2:1612743/1‑100
                                                                                                   CGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGA      >  2:2893759/1‑100
                                                                                                   CGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGA      <  2:1673073/100‑1
                                                                                                   CGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGA      <  2:1562145/100‑1
                                                                                                   CGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGA      <  2:1561974/100‑1
                                                                                                    GCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTTTTTTTTTTTTTTCCACAAGTAAATATTGGCAACCCGCGCTGGAAGCCTCATCCAGAG     >  1:33078/1‑100
                                                                                                     CCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGC    >  2:3370806/1‑100
                                                                                                     CCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGC    <  2:3746266/100‑1
                                                                                                     CCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCGCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGC    <  2:2434349/100‑1
                                                                                                       CGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGCAC  >  2:4096961/1‑100
                                                                                                       CGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGCAC  >  2:505342/1‑100
                                                                                                       CGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGCAC  >  1:328398/1‑100
                                                                                                                                                                                                           
TGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269590‑1269694
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCATCATCCAGAGCAC  <  NC_000913/1270193‑1270096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.