New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1843797	NA (NA)	20 (0.140)	11/166	NT	NA	noncoding (74/93 nt)	REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 1843810	NA (NA)					noncoding (87/93 nt)	REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences

GCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1843693‑1843797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAACTTA  <  NC_000913/1843810‑1843712                                                                                                                                                                                                              aCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTGATTGCAGTTACGCTCTAATGTAGG                                                                                                          >  1:1380519/2‑100  CTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGC                                                                                                         >  1:3773584/1‑100  CTGGCGCAGGGTGTGATTTAAGTTGTAAACGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGACACAATTCATTGCAGTTACGCTCTAATGTAGGC                                                                                                         <  1:2636172/100‑1    GGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCG                                                                                                       <  2:3933256/100‑1    GGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCG                                                                                                       >  2:2409942/1‑100     GCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGG                                                                                                      >  2:4188542/1‑100      CGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGG                                                                                                     >  2:964642/1‑100          GGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCG                                                                                                 >  1:4271987/1‑100           GGTGTGATTTACGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACACTTCCTTGCAGTTACGCTCTAATGTAGGCCGGG                                                                                                     >  1:3749606/1‑95                        gTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGG                                                                                   <  1:2452041/99‑1                         TGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGC                                                                                  <  2:41684/100‑1                          GTAAATGCCTGATGGCGCTACGCTTATCAGTCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCC                                                                                 <  1:4188512/100‑1                          GTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCC                                                                                 <  2:1917405/100‑1                          GTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCC                                                                                 <  1:1054535/100‑1                          GTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCC                                                                                 <  2:970811/100‑1                           TAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCT                                                                                <  2:1090529/100‑1                           TAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCT                                                                                <  2:2503776/100‑1                           TAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCT                                                                                <  1:4195174/100‑1                           TAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCT                                                                                <  1:2629828/100‑1                           TAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCT                                                                                <  1:1481903/100‑1                             AATGCCTGGTCGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTAC                                                                              <  1:1368971/100‑1                              ATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTACA                                                                             <  1:3815507/100‑1                                  CTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTACATTAn                                                                         <  1:2122106/100‑2                                  CTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTACATTAG                                                                         <  2:1256561/100‑1                                   TGATGGCGCTACGC‑GATGAGGCCTGCAAATGGGCACAATTCATTGCAGTTACCCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAG                                                                       <  1:1851581/100‑1                                    GATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAG                                                                       <  2:934213/100‑1                                                CTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGTGGCGCTGCGCTTGCCCGGCCTACATTAGTGCGTAACTGCAAT                                                           <  2:2982763/100‑1                                                                    GCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGG                                       <  2:4272018/100‑1                                                                                              ATGTAGGCCGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCA             >  1:519929/1‑100                                                                                                     CCGGGGGCGCTGCGCTTGCCCGGCCTCCATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAA      >  2:2685955/1‑100                                                                                                      CGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAAC     <  2:4119107/100‑1                                                                                                      CGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAAC     >  1:2033741/1‑100                                                                                                      CGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAAC     >  1:2372274/1‑100                                                                                                      CGGGGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAAC     <  2:1764806/100‑1                                                                                                       GGGGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAACT    >  2:644568/1‑100                                                                                                         GGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAACTTA  <  2:3285595/100‑1                                                                                                         GGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAACTTA  <  1:2618671/100‑1                                                                                                         GGGCGCTGCGCTTGCCCGGCCTACATGAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAACTTA  <  2:3076793/100‑1                                                                                                                                                                                                              GCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1843693‑1843797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggGGCGCTGCGCTTGCCCGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCATTTACAACTTA  <  NC_000913/1843810‑1843712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.