| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1928212 = | 127 (0.800) | 20 (0.140) | 8/164 | NT | 15.6% | coding (628/2061 nt) | ptrB | protease II |
| ? | NC_000913 | 1928238 = | 100 (0.690) | coding (602/2061 nt) | ptrB | protease II | |||||
CCCAGCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1928317‑1928212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccagACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAG > NC_000913/1928238‑1928335 CCCAGCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTA < 2:2812905/100‑1CCCAGCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTA > 1:24373/1‑100 CAGCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACG < 2:895526/100‑1 CAGCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACG > 2:2085191/1‑100 CAGCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACG > 2:2953567/1‑100 CAGCTTTGTCTGGGCAAATGACTCCGGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACG < 2:2153771/100‑1 GCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCC < 1:3117315/100‑1 GCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCC < 2:792886/100‑1 GCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCC < 1:4215925/100‑1 TTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCCAG > 2:1207752/1‑100 TTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCCAG < 2:2859898/100‑1 TTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCCAG < 2:465520/99‑1 CATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAG > 2:3953530/1‑100 CCTTATCAGGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTT > 2:2885952/1‑100 TATCAGGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCC > 1:914250/1‑100 CAGGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAG > 2:1120324/1‑100 GGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAGGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGAC > 1:2346588/1‑100 GGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGAC > 2:447824/1‑100 GGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGAC > 1:932393/1‑100 GGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGAC > 2:1997869/1‑100 GGTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGAC > 1:2244885/1‑100 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACA > 2:4192193/1‑100 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACA > 2:3296304/1‑100 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACA > 2:2333788/1‑100 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACA > 1:457095/1‑100 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACA > 1:590052/1‑100 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGAC > 1:998944/1‑99 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGA > 2:3434175/1‑98 GTCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGACATTTGCCCAGACA > 2:2351171/1‑100 TCTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAA > 2:1834837/1‑100 CTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAA > 1:1499636/1‑100 CTGGCGTCACGCCATCGGTACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAA > 1:316284/1‑100 taACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTAT > 2:2966576/3‑100 ACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCC < 1:211779/100‑1 ACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCC > 2:1172191/1‑100 ACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCC < 2:2704206/100‑1 ACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCC < 2:2521945/100‑1 ACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCC < 2:233630/100‑1 CGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCA > 2:1569027/1‑100 CGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCA > 1:4370875/1‑100 GCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAG > 2:2553697/1‑100 GCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCC < 2:3856775/98‑1 CCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGC < 2:4370906/100‑1 CCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGC < 2:581044/100‑1 CCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGC < 1:2812889/100‑1 CAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCA > 2:517084/1‑100 AGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAG < 2:4186666/100‑1 AGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAG < 1:2933468/100‑1 CCCAGCTTTGTCTGGGCAAATGACTCCTGGATTTTCTACTATGTTCGCAAGCATCCGGTGACGCTGCTGCCTTATCAGGTCTGGCGTCACGCCATCGGTACGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1928317‑1928212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccagACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAG > NC_000913/1928238‑1928335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |