| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2731304 = | 56 (0.350) | 52 (0.350) | 14/166 | NT | 49.9% | intergenic (‑147/+296) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | NC_000913 | = 4035360 | NA (NA) | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
GGGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2731408‑2731304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG < NC_000913/4035360‑4035263 GGGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAA > 1:3041980/1‑100 GTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGC > 2:2790899/1‑100 CTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC > 1:1795529/1‑100 CAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAAT > 2:2469479/1‑100 caaaaatAAATGCTTGACTCTGTAGCGGGAAGGCGTACTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTC > 1:2359692/8‑100 caaAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCTCCGCTGAGAAAAAGCGAAACGTCGCGGGGTGTGCATAATACGACTT > 1:1277481/4‑99 CTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGC > 2:1239170/1‑100 AAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGC > 2:2578859/1‑100 TGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCG > 2:3739250/1‑100 CACACCCCGCGCCGCTGAGAAAAAGCGAA‑‑‑‑‑GCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCT > 2:1145125/1‑100 CACACCCCGCGCCGCTGAGAAAAAGCGAA‑‑‑‑‑GCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCT > 2:591683/1‑100 CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC > 2:3180648/1‑100 CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC > 2:1583669/1‑100 CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC > 2:2258820/1‑100 CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC > 2:893765/1‑100 CCCCGCGCCGCTGAGAAAAAGCGAA‑‑‑‑‑GCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG > 1:4349714/1‑100 CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC > 2:4230804/1‑100 CCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCT > 1:48757/1‑100 CCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTT > 1:2667605/1‑98 CCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC > 1:1984246/1‑100 CCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTGCGCGCTACAGAGTCAAGCATGTCTTTTTGCTTTCTCTGCCGTAGTCCTC > 1:2232775/1‑100 CCGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC > 2:1317557/1‑100 CCGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAAAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC > 2:1454549/1‑100 caCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 2:2975505/3‑100 CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 2:3714975/1‑100 CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 2:953656/1‑100 CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 1:3927895/1‑100 CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 2:434280/1‑100 CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 1:1562669/1‑100 CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGACAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTaa > 1:2867868/1‑98 CGCGCCGCTGAGAAAAAGCGAAGCGGCACGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 1:2446232/1‑100 CGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGTTTTCTTTGTCGTAGTTC > 1:2932764/1‑97 CGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 2:2157551/1‑100 CGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC > 1:4382142/1‑99 GCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAG > 2:2130158/1‑100 GCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAG > 2:3864424/1‑100 GCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 1:3254879/1‑99 GCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 1:3217882/1‑99 GCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGGTCTCAG > 1:1665104/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTTCTTTCTCTGCCGGAGTTCTCAGG > 1:2612094/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAag > 1:758048/1‑98 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG > 2:1956792/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG > 2:2873697/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG > 1:970699/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG > 2:2601585/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG > 2:645596/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA > 1:1368923/1‑98 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGGCAAGCATTTATTTTTGCTTTCTATGCCGGAGTTCTCAGG > 1:2579186/1‑100 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGCCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAG > 2:1904163/1‑99 CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGCCAAGCATTTATTTTTGCTTTCTCTGCCAGAGTTCTCAG > 2:2564032/1‑99 GCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGA > 2:2168114/1‑100 CCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAG > 2:2362996/1‑100 CCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAG > 2:3933038/1‑100 CCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGGTCTCAGGAG > 2:4124632/1‑100 CGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGA > 2:3815390/1‑100 tttttctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCCTGAGAACTCCGgc < 2:3813788/92‑3 cAGCGGCGCGGGGTGTGCATAATACGCCTTACCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACTCTGGTGACTCG > 1:1519242/2‑99 AGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAGCCCCGCTGACCCGGC < 1:2369478/100‑1 AGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGC > 1:3249353/1‑100 AGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGC < 2:1895714/100‑1 GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCG > 2:2106347/1‑100 GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCG > 2:708412/1‑100 GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCG > 2:347363/1‑100 GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCG < 2:169825/100‑1 GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGC > 1:1548064/1‑99 CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG < 1:3251156/100‑1 CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG < 2:2842708/100‑1 CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG < 2:4071135/100‑1 CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG < 2:847540/100‑1 GGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGC < 1:3646776/100‑1 GGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGC > 2:4290160/1‑100 GGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGC > 2:2640758/1‑100 GGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGC > 2:1475997/1‑100 GGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGC > 1:1784342/1‑100 GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG < 2:2864450/100‑1 GGGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2731408‑2731304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG < NC_000913/4035360‑4035263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |