| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2798052 | NA (NA) | 15 (0.100) | 7/166 | NT | NA | intergenic (+8/+39) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated |
| ? | NC_000913 | = 2798082 | NA (NA) | noncoding (30/30 nt) | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2797955‑2798052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTCC < NC_000913/2798082‑2797979 GTTGGTGCCGGGTTACTGTTTGCAGGAATCAGTGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGC > 2:1400665/1‑100 TTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCC < 1:3153798/100‑1 TGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCG < 2:2488659/100‑1 GGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGG < 2:2377213/100‑1 GTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGA > 2:1194320/1‑100 GTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGA > 2:2328460/1‑100 GTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGA > 1:2025862/1‑100 GTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGA > 1:2128311/1‑100 TGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACAAGCTTGAGAAGCGACGCCGGA > 1:177427/1‑99 GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGA‑‑‑CGCTGCTAGGGCGCGTCCGGC < 1:2118219/100‑1 GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTC < 1:3149577/100‑1 GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTC < 1:3185215/100‑1 GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTC < 1:3688718/100‑1 GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGACGTC < 1:3443930/100‑1 cttccgatcTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCG < 1:1215519/91‑1 CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCG < 2:387150/100‑1 CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCG < 2:3930328/100‑1 CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCG < 2:426515/100‑1 CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCG < 1:2957621/100‑1 GGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGC < 1:1901233/100‑1 GTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCT < 1:1825078/100‑1 TTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTC < 1:1783105/100‑1 TGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCA < 2:3371969/100‑1 GGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGagatcggaag > 2:1215524/1‑90 GCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGA > 1:3992636/1‑100 GCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGA < 2:2360738/100‑1 CCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGAT > 2:1879146/1‑100 CGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATT > 2:4194278/1‑100 GGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTC > 2:3616094/1‑100 GATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTCC < 1:3250454/100‑1 GATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTCC < 2:3563333/100‑1 GTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2797955‑2798052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTCC < NC_000913/2798082‑2797979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |