| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2888333 | NA (NA) | 5 (0.030) | 4/164 | NT | NA | intergenic (‑21/+54) | cysH/cysI | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent/sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
| ? | NC_000913 | = 2888366 | NA (NA) | noncoding (33/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2888237‑2888333‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGCA < NC_000913/2888366‑2888261 CGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCC > 2:850107/1‑100 TTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTG < 1:2390844/100‑1 TTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTG > 1:3792084/1‑100 TAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGA > 2:1256616/1‑100 AGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGAT < 2:879758/100‑1 AGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGAT > 1:2785947/1‑100 AGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTG > 2:971626/1‑98 GTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGAT < 1:1922160/99‑1 GATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAAGAACGCGTGAGCGTCGCATCA < 1:492779/100‑1 CCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAG < 1:254481/100‑1 ctgCGGCTGTGCGTTCAGGGCGTTTAGGTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAG < 1:1475829/96‑1 CTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCGTGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGG < 1:2718692/100‑1 GCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGC < 1:550261/96‑1 GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAG > 2:274135/1‑100 GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAG > 2:1525473/1‑100 CCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGA > 1:2303088/1‑100 CTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGAT < 2:1690678/100‑1 CTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGAT > 2:3842768/1‑100 TGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATC < 2:2893003/100‑1 TGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATC > 2:949074/1‑100 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG < 2:1376430/100‑1 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG < 2:1360998/100‑1 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG > 2:235245/1‑100 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG > 2:1271223/1‑100 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG < 2:352615/100‑1 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG < 1:2749171/100‑1 ATAAGAACGTGTGAGCGTCGTATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG < 1:1305216/99‑1 ATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGCGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGC > 1:3077442/1‑100 ATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGC > 2:2339098/1‑100 ATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGC > 1:3076549/1‑100 TAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGCA > 1:2429454/1‑100 TAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGCA < 2:339350/100‑1 CGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2888237‑2888333‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGCA < NC_000913/2888366‑2888261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |