New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2900530138 (0.870)23 (0.170) 11/156 NT 16.3% intergenic (‑257/‑62) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
?NC_000913 = 2900548 116 (0.840)intergenic (‑275/‑44) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein

ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2900421‑2900530
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaaaagtaaGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCTTC  <  NC_000913/2900548‑2900451
                                                                                                                                                                                                                 
ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTG                                                                                                              >  2:2643813/1‑100
ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTG                                                                                                              >  1:741081/1‑100
ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTG                                                                                                              >  1:1939625/1‑100
ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTG                                                                                                              <  2:116397/100‑1
  aCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG                                                                                                            <  1:3897348/99‑1
  TCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG                                                                                                            <  2:4090290/100‑1
    GTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAA                                                                                                          >  2:2353242/1‑100
     TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAA                                                                                                         <  2:2048458/100‑1
     TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAA                                                                                                         <  2:2619168/100‑1
     TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAA                                                                                                         >  1:932354/1‑100
     TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAA                                                                                                         <  1:3483883/100‑1
      ATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACTCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAA                                                                                                        <  1:4041127/100‑1
       TTGTCAAATAATTTTAAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAA                                                                                                        >  1:1270335/1‑100
       TTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG                                                                                                       <  2:2134977/100‑1
       TTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG                                                                                                       <  1:1742189/100‑1
       TTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG                                                                                                       <  1:23018/100‑1
       TTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG                                                                                                       <  1:3259673/100‑1
       TTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACATCTGATTTCCATGTTATTTATTATTTCAATTACTAGAGACCTCAGCAAA                                                                                                        >  1:1069427/1‑99
        TGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGT                                                                                                      <  2:4148354/100‑1
        TGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGT                                                                                                      <  2:3663900/100‑1
        TGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGT                                                                                                      >  2:2875093/1‑100
         GTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTA                                                                                                     >  2:3313764/1‑100
         GTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTA                                                                                                     >  2:2474855/1‑100
          TCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACAAAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAn                                                                                                    <  1:3710704/100‑2
                 ATTTTAAAAAGCAGAAGCGTGATTAGTGTCACACAATACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGATATCTGAGTAAAGT                                                                                                      >  1:2628191/1‑91
                    TTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTT                                                                                          >  1:815803/1‑100
                               GAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATT                                                                                <  2:815807/100‑1
                                  GCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACT                                                                             <  1:1656852/100‑1
                                      GATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTC                                                                         <  1:504934/100‑1
                                      GATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTC                                                                         <  2:354475/100‑1
                                        TTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTC                                                                       <  1:3736165/100‑1
                                        TTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTC                                                                       <  2:2385584/100‑1
                                         TACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCA                                                                      <  2:720237/100‑1
                                         TACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCA                                                                      <  2:4278202/100‑1
                                         TACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCA                                                                      <  2:4277266/100‑1
                                         TACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCA                                                                      <  2:2460226/100‑1
                                         TACTCTCACACAACACCTCTGCTTTCCAGGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCA                                                                      <  2:2695447/100‑1
                                          ACTCTCACACAACTCCTCTGCTTTCCATGTTATTTAGTATTTCAAGTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAG                                                                     <  1:673584/100‑1
                                          ACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGGCGCGCTTTCAGGTGGATTACTTTTCTCAG                                                                     <  1:1918941/100‑1
                                          ACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAG                                                                     <  1:1332567/100‑1
                                          ACTCGCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAG                                                                     <  2:2749223/100‑1
                                           CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                    <  1:996805/100‑1
                                           CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                    <  1:150168/100‑1
                                           CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                    <  2:3178305/100‑1
                                            TCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                    <  1:1053962/99‑1
                                             CTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTC                                                                  <  2:2592009/100‑1
                                              TCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCT                                                                 <  2:3632586/100‑1
                                               CACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTC                                                                <  1:2378566/100‑1
                                                                                                    GAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAA           >  2:3817051/1‑100
                                                                                                     AGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCACAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAAT          >  1:2353231/1‑100
                                                                                                      ggAAAGTAAGCCGCCCTTTCAGGTGGATTACATTTCTCAGGTATCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC         >  2:2967542/3‑100
                                                                                                      GAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC         >  1:1244231/1‑100
                                                                                                      GAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC         >  2:4240495/1‑100
                                                                                                      GAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC         <  2:3347638/100‑1
                                                                                                      GAAAAGTAAGCCGCCCTTTCAGGTGGACTACTTTTCCCAGGTCTCTAGTAATTGAAATAATAAATAACATGGGAAGCAGAGGGGTTGTGTGAGAGTAATC         >  2:3142246/1‑100
                                                                                                      GAAAAGTAAGCCGACCTTTCAGGTGGATTACATTTCTCAGGTATCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC         >  2:2968639/1‑100
                                                                                                       AAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA        >  2:1176329/1‑100
                                                                                                       AAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA        >  2:647498/1‑100
                                                                                                        AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGCAAGCAGAGGTGTTGTGTGAGAGTAATCAC       >  1:161724/1‑100
                                                                                                        AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCAC       >  2:2156987/1‑100
                                                                                                         AAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACG      >  2:2217141/1‑100
                                                                                                          AGTATGCCGCCCTTTCAGGTGTATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGn     <  1:2066163/100‑2
                                                                                                          AGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGC     >  2:2394174/1‑100
                                                                                                          AGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGC     >  2:1931532/1‑100
                                                                                                             AAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCTTC  <  2:3377558/100‑1
                                                                                                                                                                                                                 
ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2900421‑2900530
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaaaagtaaGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCTTC  <  NC_000913/2900548‑2900451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.