New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4219847	154 (0.970)	34 (0.250)	15/154	NT	19.4%	coding (1252/1737 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase
	?	NC_000913	= 4219854	149 (1.090)					coding (1259/1737 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase

AGAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4219737‑4219847 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattgagcggcACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAATGC  <  NC_000913/4219854‑4219757                                                                                                                                                                                                                   AGAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTA                                                                                                               <  2:2743289/100‑1 AGAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTA                                                                                                               <  2:3670614/100‑1  GAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTAT                                                                                                              >  2:1696832/1‑100  GAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTAT                                                                                                              >  1:659589/1‑100   AAGCGGCATAGTTCCCCAGCATTAATCGAATTACTGCTTCAGGAAGCCGCGGAACAAATCACCGTTCTCGGCGAACAAATTGTGATTCGCCATCTTTAT                                                                                                              <  1:3902569/99‑1    AGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATAT                                                                                                            <  2:642843/100‑1     GCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATT                                                                                                           <  2:2366239/100‑1     GCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATT                                                                                                           >  1:4008269/1‑100      CGGCATAGTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTG                                                                                                          <  1:41043/100‑1       GGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGA                                                                                                         >  2:3617234/1‑100       GGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGA                                                                                                         >  2:3220879/1‑100         CATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGC                                                                                                       <  2:657545/100‑1         CATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGC                                                                                                       <  2:1113560/100‑1         CATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGC                                                                                                       >  2:279114/1‑100         CATATTTCCCCGGCATTAATGGAATTACTGCTTCAGCAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGC                                                                                                       <  2:3093395/100‑1          ATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCG                                                                                                      >  2:3483980/1‑100           TATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGG                                                                                                     >  1:2267124/1‑100           TATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGG                                                                                                     >  2:3097735/1‑100           TATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGG                                                                                                     <  2:2013471/100‑1            ATTTCCCCGGCATTAATGGAATTACGGCTGCAGGAAGCAGCGGAAAAAATCACGGATCTCGGCGAACAAATTGTGATTCGCCATCTGTATTTTGAGCGGC                                                                                                    >  1:3862300/1‑100                          AATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTC                                                                                      <  2:4386699/100‑1                           ATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCA                                                                                     <  1:1513310/100‑1                           ATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCA                                                                                     <  2:4279480/100‑1                            TGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAA                                                                                    <  2:249089/100‑1                            TGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAA                                                                                    <  2:1815019/100‑1                            TGGAATTACTGCTTCAGGAAGAAGCGAAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAA                                                                                    <  1:3339970/100‑1                             GGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAAT                                                                                   <  2:571954/100‑1                             GGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAAT                                                                                   <  2:458804/100‑1                             GGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCACCATCTTTATATTGAGCGGCACCATCCGCCGCTCAAT                                                                                   <  1:1749877/100‑1                             GGAATTACGGCTTCAGGAAGCAGCGGAAATAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAAT                                                                                   <  1:1907893/100‑1                              GAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATA                                                                                  <  2:2130132/100‑1                              GAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATA                                                                                  <  2:2936883/100‑1                              GAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAAT                                                                                   <  2:1332106/99‑1                               AATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATAT                                                                                 <  2:2546455/100‑1                               AATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATAT                                                                                 <  2:2543821/100‑1                               AATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATAT                                                                                 <  2:333844/100‑1                               AATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATAT                                                                                 <  2:512839/100‑1                               AATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATA                                                                                  <  1:45410/99‑1                                ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATA                                                                                <  1:2209950/100‑1                                ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATA                                                                                <  2:3245242/100‑1                                ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATA                                                                                <  1:3140114/100‑1                                ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATA                                                                                <  1:3248261/100‑1                                 tccCTGCTTCAGGAAGCAGCGGAAAAAATCACCAATCCCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAAT                                                                                   <  1:4214841/93‑1                                 TTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAA                                                                               <  2:1195554/100‑1                                    ctaCTTCAGTAAGCAGCCGAAAAAACCTCCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGA                                                                            <  1:3150861/97‑1                                      GCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCTGCCTCTCAATAGAAAGATG                                                                          <  1:447828/100‑1                                       CTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGG                                                                         <  2:265692/100‑1                                        TTCAGGAAGCAGCGGAAAAAATCACCGTTCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGC                                                                        <  1:2711130/100‑1                                        TTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGC                                                                        <  2:1819341/100‑1                                          CAGGAAGCAGCGGAAAAAATCACCGATCGCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGA                                                                            <  1:1167467/94‑1                                             GAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATC                                                                   <  2:1045303/100‑1                                                          AAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCGCAATTTGTTCGC                                                      <  2:2496150/100‑1                                                                        GGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT                                        <  2:3469492/100‑1                                                                                             CATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGC                   >  2:1124361/1‑100                                                                                                    ATATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATT            >  1:3528189/1‑100                                                                                                     TATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTC           <  2:4279338/100‑1                                                                                                     TATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTC           <  2:4278274/100‑1                                                                                                     TATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTC           >  2:3670382/1‑100                                                                                                     TATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCAGGAAGCAGcggaaa           <  2:1916390/100‑7                                                                                                      ATTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCC          <  2:2787013/100‑1                                                                                                       TTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCA         >  1:1405856/1‑100                                                                                                       TTGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCA         >  1:2153462/1‑100                                                                                                        TGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCAT        >  2:1065250/1‑100                                                                                                        TGAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCAT        <  1:651373/100‑1                                                                                                         GAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATT       <  2:1343291/100‑1                                                                                                         GAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATT       <  1:30039/100‑1                                                                                                         GAGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATT       >  2:2118528/1‑100                                                                                                          AGCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTA      >  2:2376084/1‑100                                                                                                           GCGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAA     >  1:1216645/1‑100                                                                                                            CGGCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAA     <  1:2487423/99‑1                                                                                                              GCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAATGC  >  2:1793792/1‑100                                                                                                              GCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAATGC  >  1:60313/1‑100                                                                                                              GCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAATGC  >  1:406162/1‑100                                                                                                              GCACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAATGC  >  1:3450886/1‑100                                                                                                                                                                                                                   AGAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4219737‑4219847 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattgagcggcACCATCCGCCGCTCAATATAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAATTCCATTAATGC  <  NC_000913/4219854‑4219757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.