| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 27 (0.180) | 14/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
AAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416066‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC > NC_000913/4415992‑4416090 AAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGT > 1:3547529/1‑100 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCC < 1:16084/100‑1 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCC > 1:77687/1‑100 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCC < 1:448438/100‑1 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGAGCCTTGTC > 1:73485/1‑99 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 1:900193/1‑100 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC > 2:4011315/1‑100 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 2:3841197/1‑99 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCAAGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCG > 1:4061520/1‑98 CGCGTACAGGCGATACTGTATGCATGCGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAG > 2:2675813/1‑100 TCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTA > 2:3514752/1‑100 AATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTAT > 2:1729149/1‑100 TGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCA > 2:2291061/1‑100 GAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAG > 2:1069357/1‑100 AACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGG > 1:3202826/1‑100 AACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGG > 1:947447/1‑100 ACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGC > 2:2373637/1‑100 CAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCT > 1:4147698/1‑100 CAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCT > 2:3868714/1‑100 CAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCT > 2:3028729/1‑100 CAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCACGCT > 1:2705012/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:3750029/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:851130/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:2667683/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 1:1745978/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 1:862421/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 2:1386253/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 1:3348971/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 2:2588101/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 1:581206/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 2:1309521/1‑100 GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTG > 1:4186569/1‑100 GCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTG > 2:254512/1‑100 GATGCGGCGCGAGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCT > 1:1651905/1‑100 CGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGT < 2:3348988/100‑1 CGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACA < 1:3514734/100‑1 tgCGGCATTGTTTATTTGCTGTAGATTACACTCATGCATACAGTATCGCCTGTACGCGCAAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGC < 1:1070469/97‑1 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG < 2:2404366/100‑1 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG < 1:3137979/100‑1 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG > 2:3369460/1‑100 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG > 2:3372631/1‑100 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG < 1:2937586/100‑1 CCGGCATTGTTCATTTGCTATAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG < 1:1470586/100‑1 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGT < 1:3042248/100‑1 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGT < 2:2187507/100‑1 GGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTA > 2:1991853/1‑100 CATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC > 2:4038625/1‑100 AAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416066‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC > NC_000913/4415992‑4416090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |