| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4460417 = | NA (NA) | 33 (0.220) | 13/168 | NT | NA | noncoding (3/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4460445 = | NA (NA) | noncoding (31/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CTTCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4460520‑4460417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCC > NC_000913/4460445‑4460543 CTTCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGTCGCGACAGCGTCGCA < 1:3190374/100‑1CTTCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCA < 2:2416575/100‑1CTTCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCA > 2:3293200/1‑100 TTCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCAT > 2:2042695/1‑100 TTCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCAT > 2:831669/1‑100 TCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATC > 2:107319/1‑100 TCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCA > 2:3261082/1‑98 CACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATCA < 2:1984772/100‑1 CACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATCA < 1:4234211/100‑1 CACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATCA < 2:388735/100‑1 ACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATCAG > 2:2341859/1‑100 ACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATCAG < 1:4324264/100‑1 ACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATC < 1:16973/98‑1 CTCCAGGTCTGATAAGACGCGACAGCGTCGCATCAGGCCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAG > 2:2629059/1‑100 CTCCAGGTCTGATAAGACGCGACAGCGTCGCATCAGGCCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAG > 1:806273/1‑100 TCCAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCACTTGCCAAATGTAGGCCGGATCAGGCGTTTACGCCGCATCCGGCATTTGCTTAGC > 1:2399113/1‑100 TCCAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGC > 1:626644/1‑100 TCCAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGATTAGC > 1:1818499/1‑100 CCAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCT > 2:2070891/1‑100 ctGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTC < 2:683696/98‑1 CAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTTCCAAATGTATGCCGGATGAGGCGTTTACGCCGCCTCCGGCATGTGCTTAGCT > 2:1297446/1‑99 CAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTC > 2:3160073/1‑100 CAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTC > 2:1167753/1‑100 CAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTC > 2:462790/1‑100 CAGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTC > 1:655573/1‑100 AGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGCCATCTGCTTAGCTCA > 1:3347068/1‑100 AGGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCA > 1:4006617/1‑100 AGGTCTGATAAGACGCGAAAGAGTCGCATCAGACCTGGAGAAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATACGGCATTTGCTTAGCTCA > 1:2094420/1‑100 GGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAG > 1:683694/1‑100 GGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAG > 1:1442371/1‑100 GGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAG > 2:2067577/1‑100 GGTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAG > 2:1970188/1‑100 GTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGA > 2:338108/1‑100 GTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGA > 1:3805834/1‑100 GTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGA > 2:3566874/1‑100 GTCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCA > 2:4132115/1‑98 TCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAG > 2:2485470/1‑100 TCTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAG > 1:914444/1‑100 CTGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTTGCTTAGCTCAGAGT > 1:1925699/1‑100 TGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTG > 1:548327/1‑100 TGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTG > 2:537483/1‑100 TGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTG > 2:914839/1‑100 TGATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAG > 1:3812732/1‑98 GATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGA > 1:2243933/1‑100 GATAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGA > 1:2062644/1‑100 TAAGACGCGACAGCGTCGCATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAG > 1:1918136/1‑100 TCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTC < 1:3678240/100‑1 CAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCC < 2:1834556/100‑1 CAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCC < 1:3443734/100‑1 CAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCC < 1:3173709/100‑1 CAGACCTGGAGCAACTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCC < 1:3004354/100‑1 AGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCC < 1:4273156/100‑1 GACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCC < 2:2376715/100‑1 GACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCC > 1:3945147/1‑100 CTTCACTCTGAGCTAAGCAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGGCAATTGCTCCAGGTCTGATAAGACGCGACAGCGTCGCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4460520‑4460417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCC > NC_000913/4460445‑4460543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |