| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 358762 = | 131 (0.830) | 23 (0.150) | 11/168 | NT | 15.1% | intergenic (‑72/‑37) | cynR/cynT | transcriptional activator of cyn operon; autorepressor/carbonic anhydrase |
| ? | NC_000913 | 358788 = | 135 (0.910) | intergenic (‑98/‑11) | cynR/cynT | transcriptional activator of cyn operon; autorepressor/carbonic anhydrase | |||||
ACAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/358865‑358762‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagacAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACAGC > NC_000913/358788‑358886 ACAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGC < 2:401426/100‑1ACAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGC < 2:297682/100‑1ACAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGC < 2:1717364/100‑1ACAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAAGCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGC < 1:3372932/100‑1 CAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCA > 1:1343465/1‑100 CAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCA > 1:1830934/1‑100 CAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCA > 1:2238218/1‑100 CAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCA > 2:1491391/1‑100 GGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCAGAC > 1:373197/1‑100 GGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCAGAC > 1:182454/1‑100 AATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCG > 1:4345782/1‑100 TCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGC > 1:193179/1‑100 ACCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCG > 1:211455/1‑99 CCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAATCGGG > 1:316383/1‑100 CCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGG > 1:1151863/1‑100 CCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGG > 2:2082744/1‑100 CCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGG > 1:2089482/1‑100 CCTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGG > 1:1787099/1‑100 CTCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGA > 1:856871/1‑100 TCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAA > 2:1063168/1‑100 TCTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAA > 2:3106738/1‑100 CTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGCAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAG > 1:1274569/1‑100 CTGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAG > 1:4355264/1‑100 TGTCTGTCTCTGGGATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGAGTAGTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGC > 1:3020735/1‑100 TGTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGC > 2:4001088/1‑100 GTCTGTCTCTGGAATGAGATGCATACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCC > 1:1742096/1‑100 GTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAacc > 2:1698041/1‑97 GTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCC > 2:1551331/1‑100 GTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCC > 2:1891701/1‑100 GTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCC > 2:2445508/1‑100 GTCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGAGTATTGATGGCTTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCC > 1:1581113/1‑100 TCTGTCTCTGGAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCT > 1:2792645/1‑100 GAATGAGAGGCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACA < 2:856875/100‑1 GAGCCAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAGATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGC < 1:2585206/100‑1 CAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGACGACA > 2:3954871/1‑100 AGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACAC < 2:296449/100‑1 GACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACA > 2:2691385/1‑100 GACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACA < 2:756569/100‑1 GACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACA > 2:447629/1‑100 GACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACA < 2:1745462/100‑1 GACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACA < 1:3648911/100‑1 CAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACAGC > 1:234930/1‑100 CAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACAGC > 1:3704372/1‑100 CAGAGGTTAACGGTGAAAGAGATTATTGATGGAGTCCTTAAATTCCAGCGCGATGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACAGC < 2:598633/100‑1 ACAAGGCTTCCCGCTTCGGAAATGCCTCGCGCTGGAATTTAAGGAATCCATCAATAATCTCTTTCACCGTTAACCTCTGTCTGTCTCTGGAATGAGAGGCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/358865‑358762‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagacAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACAGC > NC_000913/358788‑358886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |