| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 872429 | 124 (0.780) | 21 (0.140) | 10/168 | NT | 15.1% | coding (540/912 nt) | gsiD | glutathione ABC transporter permease |
| ? | NC_000913 | = 872441 | 119 (0.800) | coding (552/912 nt) | gsiD | glutathione ABC transporter permease | |||||
TTCCCGGGTATTTTACTGGCGATCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/872328‑872429‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccGCGCACCAGGCGGGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACGTTAGCAATGCCGCTTCCCAACACCGCAACAACAGCGATCGCCAG < NC_000913/872441‑872343 TTCCCGGGTATTTTACTGGCGATCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTG < 2:2167430/100‑1TTCCCGGGTATTTTACTGGCGATCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTG < 1:805492/100‑1 TCCCGGGTATTTTACTGGCGATCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGC < 2:4098764/100‑1 ccgGGGTATTTTACTGGCGATCGCTGTGGTGGCGGTGTTGGGAAGCGGCATTGCTGACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCC < 2:129851/97‑1 CCCGGGTATTTTACTGGCGATCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCC > 1:1571343/1‑100 ATCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAAC < 2:2951969/100‑1 TCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCTGGCGGGCAAACG < 2:2893164/100‑1 TCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACG < 2:298708/100‑1 TCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACG < 2:180088/100‑1 CGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGC < 1:1984751/100‑1 CGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGC < 1:1479542/100‑1 CGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGC < 1:2200683/100‑1 GCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCACCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCG < 1:2910972/100‑1 GCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCAAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCG < 1:4278914/100‑1 CTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCGG < 2:3428098/100‑1 TGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCGGG < 2:100007/100‑1 TGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCGGG < 2:2999896/100‑1 TGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCGGG < 1:3962241/100‑1 GTTGTTGCGGTGTTGGGAAGCGTCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGTGTTGCCGCGCACCAGGCGGGCAAACGCGGG < 1:2429029/100‑1 GTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCGGGG < 1:489870/100‑1 GTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCGGGGATG < 1:142053/100‑1 TTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGTGTTGCCGCGCACCAGGCGGGCAAACGCGGGGATn < 2:2396803/100‑2 TTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGTGTTGCCGCGCACCAGGCGGGCAAACGCGGGGATG < 2:3262818/100‑1 TTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCAGCGTGTTGCCGCGCACCAGGCGGGCAAACGCGGGGATG < 2:976317/100‑1 GTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCCGCGCACCAGGCGGGCAAACGCGGGGATGGAA < 1:843553/97‑1 ctTGATTATTGCGGTCGCCATTTTTTTCAGCCCCGCGTGTTGCCGCGCACCAGGCGTGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACG < 1:138774/97‑1 TTGCCGCGCACCAGGCGGGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACGTTAGCAATGCCGCTTCCCAACACCGCAACAACAGCGATCG < 2:619965/100‑1 TGCCGCGCACCAGGCGGGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACGTTAGCAATGCCGCTTCCCAACACCGCAACAACAGCGATCGC > 2:1169390/1‑100 GCCGCGCACCAGGCGGGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACGTTAGCAATGCCGCTTCCCAACACCGCAACAACAGCGATCGCC < 1:1147900/100‑1 GCCGCGCACCAGGCGGGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACGTTAGCAATGCCGCTTCCCAACAACGCAACAACAGCGATCGCC > 1:228828/1‑100 CGCGCACCAGGCGGGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACGTTAGCAATGCCGCTTCCCAACACCGCAACAACAGCGATCGCCAG < 2:2020134/100‑1 TTCCCGGGTATTTTACTGGCGATCGCTGTTGTTGCGGTGTTGGGAAGCGGCATTGCTAACGTGATTATTGCAGTCGCCATTTTTTCCATCCCCGCGT‑TTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/872328‑872429‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccGCGCACCAGGCGGGCAAACGCGGGGATGGAAAAAATGGCGACTGCAATAATCACGTTAGCAATGCCGCTTCCCAACACCGCAACAACAGCGATCGCCAG < NC_000913/872441‑872343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |