BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304496 =	127 (0.800)	34 (0.230)	12/164	NT	22.5%	noncoding (80/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
*	?	NC_000913	2304591 =	NA (NA)	34 (0.230)	12/164	NT	22.5%	noncoding (175/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

Only 100 of 218 total aligned reads displayed.

GCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGAC  >  NC_000913/2304397‑2304595

ttgggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca                                                                                                     >  1:3466985‑M1/100‑100 (MQ=255)

ttgggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca                                                                                                     >  2:2975336‑M1/100‑100 (MQ=255)

 tgggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgggcgagcgtcgcAt                                                                                                    <  1:2232019‑M1/2‑1 (MQ=255)

 tgggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcAt                                                                                                    <  2:1729354‑M1/2‑1 (MQ=255)

 ccGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCTAACGCCCCAGCCGGTTGCCTGATGCGACCCGGGCGCGTCTTAt                                                                                                    >  2:2032190/1‑100 (MQ=11)

 ccGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                    >  2:512636/1‑100 (MQ=31)

  gggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca                                                                                                     <  1:193132‑M1/1‑1 (MQ=255)

  gggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc                                                                                                   >  1:1827908‑M1/98‑100 (MQ=255)

  gggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc                                                                                                   >  1:2760875‑M1/98‑100 (MQ=255)

  gggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc                                                                                                   <  2:1323671‑M1/3‑1 (MQ=255)

   ggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCa                                                                                                  >  2:4366543‑M1/97‑100 (MQ=255)

   ggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCa                                                                                                  >  2:1959972‑M1/97‑100 (MQ=255)

    gcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcgcttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                 <  1:546709‑M1/5‑1 (MQ=255)

    gcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                 >  2:2716179‑M1/96‑100 (MQ=255)

    gcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacacgccagcgtcgcGTCAg                                                                                                 <  1:2543657‑M1/5‑1 (MQ=255)

     cgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg                                                                                                >  2:2116563‑M1/95‑100 (MQ=255)

     cgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg                                                                                                <  2:4227369‑M1/6‑1 (MQ=255)

     cgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg                                                                                                >  2:1976892‑M1/95‑100 (MQ=255)

     cgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg                                                                                                >  1:1472183‑M1/95‑100 (MQ=255)

     cgttagatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg                                                                                                >  2:4254190‑M1/95‑100 (MQ=255)

      gttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc                                                                                               >  2:3888113‑M1/94‑100 (MQ=255)

      gttagatgtcggatgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc                                                                                               <  1:3112315‑M1/7‑1 (MQ=255)

       ctagacgacggatgccgcgtctccgccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg                                                                                                >  1:2837922‑M1/93‑98 (MQ=255)

         agaggcaggatgcggcgtaacccgctgatccgaccttcggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc                                                                                               >  1:3825828‑M1/91‑97 (MQ=255)

                           aGACAAGGTGGTCACGCCGCATCCGACATGCAACGCCCGAGCCGGTTGTCTGATGCGACGCTGGCGCGTCTTATCATGCCTACACCGCTGTGAAGTGCgg                                                                          <  1:858379/100‑1 (MQ=11)

                           aGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCgc                                                                          >  2:3820564/1‑99 (MQ=11)

                            gACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGc                                                                         <  2:1632527/100‑1 (MQ=32)

                            gACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGCCTTATCAGGCCTACACCGCTGTGAAGTGCg                                                                           >  1:1077047/1‑98 (MQ=11)

                                 ggCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCAcccc                                                                    <  1:920120/100‑1 (MQ=38)

                                   cGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGt                                                                  >  2:2826552/1‑100 (MQ=35)

                                    ggTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTa                                                                 <  2:1718928/100‑1 (MQ=38)

                                     gTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAg                                                                >  1:819559/1‑100 (MQ=38)

                                      tCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAgg                                                               <  1:3684670/100‑1 (MQ=38)

                                      tCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAgg                                                               <  2:3398061/100‑1 (MQ=38)

                                       naacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAgg                                                               <  2:4300422‑M1/39‑1 (MQ=255)

                                       cACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAgg                                                               <  1:3742330/99‑1 (MQ=38)

                                        aCGCCGCATCCGACATCCTACGGCCGTGCCCGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCgg                                                                  <  1:729576/95‑2 (MQ=11)

                                          tccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAg                                                           <  1:4301605/99‑1 (MQ=255)

                                          gccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTcgg                                                           >  2:1194720/1‑98 (MQ=25)

                                          gccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTc                                                             >  2:1868535/1‑98 (MQ=35)

                                          gccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAg                                                           <  2:723850/100‑1 (MQ=40)

                                             gcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCGGACa                                                        >  1:110564/1‑100 (MQ=25)

                                               aTCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAg                                                      <  2:4095746/100‑1 (MQ=255)

                                                 ccGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGc                                                    >  2:2254886/1‑100 (MQ=255)

                                                 ccGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGc                                                    >  2:1027954/1‑100 (MQ=255)

                                                       tCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCAc                                              >  2:2594571/1‑100 (MQ=255)

                                                        ccAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACACGGCGGTCAcg                                             >  1:1286947/1‑100 (MQ=255)

                                                         cAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCAcgc                                            >  1:1918207/1‑100 (MQ=255)

                                                           aCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCAcgccg                                          <  2:3281899/100‑1 (MQ=255)

                                                           aCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCAcgccg                                          <  2:3356752/100‑1 (MQ=255)

                                                            cGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCAcgccgc                                         >  2:4122841/1‑100 (MQ=255)

                                                             gCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGGCTTATGAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCa                                        <  1:3050532/100‑1 (MQ=255)

                                                              cccGAGCGGGTTGCCGGATGCGACGTTGGCGCGGCTGAACAGGCCTAAACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCAcgcc                                           <  1:2019895/96‑1 (MQ=17)

                                                               cagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATc                                      <  1:1027703‑M1/64‑1 (MQ=255)

                                                                  aGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                   <  2:1129046/100‑1 (MQ=255)

                                                                  aGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                   >  2:1053529/1‑100 (MQ=255)

                                                                       gTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATcc                              <  1:302167/100‑1 (MQ=255)

                                                                       gTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATcc                              >  2:2516546/1‑100 (MQ=255)

                                                                       gTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATcc                              <  2:2352718/100‑1 (MQ=255)

                                                                       gTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATcc                              <  2:520619/100‑1 (MQ=255)

                                                                        ttGCCTGATGCGACGCGGGCGCGTCTTATCAGGCCTACACCGCTGGGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCa                             <  2:3099554/100‑1 (MQ=255)

                                                                          gcctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGacatctaac                           <  2:347520‑M1/75‑5 (MQ=255)

                                                                          gcctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAAc                           <  2:2642088‑M1/75‑1 (MQ=255)

                                                                          gcctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAAc                           <  2:2078909‑M1/75‑1 (MQ=255)

                                                                          gcctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAAc                           <  1:3969580‑M1/75‑1 (MQ=255)

                                                                          gcctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTAAGACAACGCGGTCACGCCGCATCCCACAACCaa                            <  2:3962494‑M1/74‑1 (MQ=255)

                                                                           cctgataagatgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGAAAAGGCGGTCACGCCGCATCCGACATCCAACg                          <  2:1580097‑M1/76‑1 (MQ=255)

                                                                           cctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACg                          <  1:1984829‑M1/76‑1 (MQ=255)

                                                                           ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCGGACAAGGCGGTCACGCCGCATCCGACATCCAACg                          >  2:1984359/1‑100 (MQ=255)

                                                                           ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACg                          >  2:586828/1‑100 (MQ=255)

                                                                            ctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGc                         <  1:3256636‑M1/77‑1 (MQ=255)

                                                                             tgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGcc                        <  1:4400746‑M1/78‑1 (MQ=255)

                                                                             tgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGcc                        >  1:1362183‑M1/23‑100 (MQ=255)

                                                                             tGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGcc                        <  2:3111942/100‑1 (MQ=255)

                                                                              gATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTTACGCCGCATCCGACATCCAACGccc                       >  1:3550410/1‑100 (MQ=255)

                                                                                tGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGa                     >  2:1361459/1‑100 (MQ=255)

                                                                                 gCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGa                     <  1:3232968/99‑1 (MQ=255)

                                                                                 gCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAg                    <  2:1918213/100‑1 (MQ=255)

                                                                                 gCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAg                    >  2:3780690/1‑100 (MQ=255)

                                                                                 aagacgcgccagcgtcttATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGccc                       <  1:36099‑M1/79‑1 (MQ=255)

                                                                                  cGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTTAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGc                   >  1:4272981/1‑100 (MQ=255)

                                                                                  cGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGc                   >  2:3068575/1‑100 (MQ=255)

                                                                                   gACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACAGCTCACGCCCGCGcc                  >  1:987191/1‑100 (MQ=14)

                                                                                     cGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCGGATAAGGCGGTCACGCCGCATCCCGCATCCAAcacgagagc                   >  1:287660/1‑89 (MQ=11)

                                                                                     cGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCgg                <  1:2491537/100‑1 (MQ=255)

                                                                                     cGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCgg                >  1:1873746/1‑100 (MQ=255)

                                                                                       cTGGCGAGGCTTATGAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGt               <  1:3529974/99‑1 (MQ=255)

                                                                                        tGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTg             <  2:2829918/100‑1 (MQ=255)

                                                                                         ggCGCGTCGTAACTGCCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGc            <  1:604024/100‑1 (MQ=14)

                                                                                           cgcgGCTTAACAGGCCTACACCGCTGTGGAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGcc           <  1:2638866/99‑1 (MQ=255)

                                                                                              gTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCGGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAt       >  2:4274544/1‑100 (MQ=255)

                                                                                              gTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGATTGCCTGa        >  2:2543670/1‑99 (MQ=255)

                                                                                                cTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGc     <  2:1590144/100‑1 (MQ=255)

                                                                                                cTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGc     <  2:1891187/100‑1 (MQ=255)

                                                                                                  tATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACCTCCAACGCCCGAGCCGGTTGCCTGATGCg    >  2:3202572/1‑99 (MQ=255)

                                                                                                  tATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGa   >  2:3985240/1‑100 (MQ=255)

                                                                                                  tATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGa   >  2:3597409/1‑100 (MQ=255)

                                                                                                  tATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGa   >  2:1651126/1‑100 (MQ=255)

                                                                                                   ATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTTACGCCGCATCCGACATCCAACGCCCAAGCCGGTTGCCTGatgag    <  1:3455600‑M1/98‑3 (MQ=255)

                                                                                                   ATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGAc  >  1:3773179‑M1/1‑100 (MQ=255)

GCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGAC  >  NC_000913/2304397‑2304595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.