New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 277706NA (NA)21 (0.140) 10/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 252 total aligned reads displayed.

CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277608‑277805
                                                                                                  |                                                                                                   
  cGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgcc                                                                                                  <  1:1254064‑M1/100‑4 (MQ=255)
   gCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccg                                                                                                 <  2:4183271‑M1/100‑5 (MQ=255)
       gCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTAGCGGGGCTACATCGTTCATTGGAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATg                                                                                             <  2:783061/100‑1 (MQ=255)
        cGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATgg                                                                                            >  1:3150479/1‑100 (MQ=255)
         ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggc                                                                                           >  2:3061934/1‑100 (MQ=255)
          gATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcg                                                                                          >  2:2145453/1‑100 (MQ=255)
          gATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcg                                                                                          <  2:1609603/100‑1 (MQ=255)
          gATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCAGGATggcg                                                                                          >  2:363700/1‑100 (MQ=255)
           atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  1:1382329/100‑1 (MQ=255)
           atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  2:3533613/100‑1 (MQ=255)
           atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  1:2471002/100‑1 (MQ=255)
           atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  1:4195075/100‑1 (MQ=255)
             atCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGca                                                                                       <  1:4083877/100‑1 (MQ=255)
               cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcaca                                                                                     <  1:3629227/100‑1 (MQ=255)
               cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcaca                                                                                     >  2:1751749/1‑100 (MQ=255)
                     gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               <  2:2659845/100‑1 (MQ=255)
                     gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               <  1:1533217/100‑1 (MQ=255)
                        aaaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTA                                                                            <  2:3375757‑M2/100‑1 (MQ=255)
                             cgcgAAGCTGTGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGTATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       >  1:2888362‑M2/1‑100 (MQ=255)
                             cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccgg                                                                       <  1:1033510‑M1/100‑31 (MQ=255)
                             cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       >  1:1137749‑M2/1‑100 (MQ=255)
                              gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggc                                                                      <  2:676756‑M1/100‑32 (MQ=255)
                              gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGC                                                                      <  2:427162‑M2/100‑1 (MQ=255)
                               cgAAGCTGAGGGTTTATGGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:2798682/100‑1 (MQ=255)
                               cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  2:1466984/100‑1 (MQ=255)
                               cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:1788342/100‑1 (MQ=255)
                               cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:560078/100‑1 (MQ=255)
                               cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:3850128/100‑1 (MQ=255)
                                gAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaa                                                                    <  2:2521008‑M1/100‑34 (MQ=255)
                                gAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaa                                                                    <  1:2046532‑M1/100‑34 (MQ=255)
                                gAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCt                                                                    <  2:1197687/100‑1 (MQ=255)
                                 aaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaat                                                                   <  2:247749‑M1/100‑35 (MQ=255)
                                  aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatg                                                                  <  2:4111675‑M1/100‑36 (MQ=255)
                                    cTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaa                                                                <  2:621998/100‑1 (MQ=255)
                                     tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcct                                                               <  1:1440198‑M1/100‑39 (MQ=255)
                                     tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                                               >  1:4237229/1‑100 (MQ=255)
                                     tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                                               >  1:2982145/1‑100 (MQ=255)
                                      gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                                              >  1:3780018/1‑100 (MQ=255)
                                       aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcctga                                                             <  1:1895746‑M1/100‑41 (MQ=255)
                                       aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                                              >  1:631309/1‑99 (MQ=255)
                                       aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCACGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                             <  1:2998701/100‑1 (MQ=255)
                                        gggTTTATCGGGTCTAGATCGTGCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                                            <  1:925356/100‑1 (MQ=255)
                                        gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                                            <  2:3874910/100‑1 (MQ=255)
                                         ggTTTATCGGGTGTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACca                                                           >  2:2896838/1‑100 (MQ=255)
                                         ggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACca                                                           >  2:2133931/1‑100 (MQ=255)
                                                cGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACg                                                    >  2:2300266/1‑100 (MQ=255)
                                                  ttccgatctCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGtt                                                  <  2:1943631/92‑1 (MQ=255)
                                                  ggTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGtt                                                  <  2:2550866/100‑1 (MQ=255)
                                                   gTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGTCGGCACACGCGCCTTATCCGGCCTACAAAACCACAAAACGTTa                                                 <  1:3732692/100‑1 (MQ=255)
                                                   gTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTa                                                 <  2:1901750/100‑1 (MQ=255)
                                                   atCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTa                                                 <  1:1470851/99‑1 (MQ=255)
                                                    tCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                                                <  1:3464867/100‑1 (MQ=255)
                                                      tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                                              <  1:4314993/100‑1 (MQ=255)
                                                       aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTaagat                                             >  2:1470856/1‑96 (MQ=255)
                                                       aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGcc                                             >  2:398821/1‑100 (MQ=255)
                                                        cATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGGCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  2:3110716/100‑1 (MQ=255)
                                                        cATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  2:2206859/100‑1 (MQ=255)
                                                        cATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  2:3939433/100‑1 (MQ=255)
                                                          tcggtcagagTAGTCCTGAAAAGCCCAGTTCATCATGCATTGACCTATGGCGGCACCAGCGCCTTATCCGGCCTACAAAACCCCAAAACGt                                                   <  1:2632386/82‑1 (MQ=16)
                                                          tCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCa                                          <  1:1704027/100‑1 (MQ=255)
                                                           cGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTagatcggaa                                         >  1:1943624/1‑92 (MQ=255)
                                                           cGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCAt                                         >  2:4404521/1‑100 (MQ=255)
                                                            gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATc                                        <  1:3158385/100‑1 (MQ=255)
                                                               cATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGTCGCATCCGc                                     <  1:1045831/100‑1 (MQ=255)
                                                                 ttGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCa                                   >  2:2933045/1‑100 (MQ=255)
                                                                  tGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg                                  <  1:2326937/100‑1 (MQ=255)
                                                                   gTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                 <  1:2924195/100‑1 (MQ=255)
                                                                      ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  1:2174288/1‑100 (MQ=255)
                                                                      ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  1:4352306/1‑100 (MQ=255)
                                                                      ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  1:3964825/1‑100 (MQ=255)
                                                                      ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  1:2155586/1‑100 (MQ=255)
                                                                       gCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaa                             <  1:4404490/100‑1 (MQ=255)
                                                                       gCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaa                             >  1:2088533/1‑100 (MQ=255)
                                                                         cTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                           <  1:3894589/100‑1 (MQ=255)
                                                                         cTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGACTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                           >  1:2814994/1‑100 (MQ=255)
                                                                          tGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaaca                          <  2:1250079/100‑1 (MQ=255)
                                                                           gATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACAt                         >  1:711311/1‑100 (MQ=255)
                                                                            aTAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATg                        <  1:2403910/100‑1 (MQ=255)
                                                                               agcgcagcgcATCCGGCATTGCCGGATGGCGGCAAAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCg                     <  1:3670941/100‑1 (MQ=255)
                                                                                gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    <  1:4114841/100‑1 (MQ=255)
                                                                                gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    >  2:2211955/1‑100 (MQ=255)
                                                                                gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    >  1:1620961/1‑100 (MQ=255)
                                                                                      cgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggat              <  2:3165764/100‑1 (MQ=255)
                                                                                      cgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggat              <  1:1593052/100‑1 (MQ=255)
                                                                                       gcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatg             <  2:2353997/100‑1 (MQ=255)
                                                                                        caTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgg            <  2:3200326/100‑1 (MQ=255)
                                                                                        caTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgg            >  2:3466627/1‑100 (MQ=255)
                                                                                         aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatg             <  1:3914974/98‑1 (MQ=255)
                                                                                            aGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAttt        <  2:1171145/100‑1 (MQ=255)
                                                                                             ggCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTc       <  1:270524/100‑1 (MQ=255)
                                                                                               cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagct     <  2:702718‑M2/100‑66 (MQ=255)
                                                                                               cATTGCCGGATGGCGGCACAAGAGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcttacaatgaacgatgtagacccgataaaccctcagct     <  2:3233137‑M2/100‑66 (MQ=255)
                                                                                                aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgatacaccctcagctt    <  1:2281174‑M2/100‑67 (MQ=255)
                                                                                                aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt    <  1:2795355‑M2/100‑67 (MQ=255)
                                                                                                aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt    <  2:384681‑M2/100‑67 (MQ=255)
                                                                                                aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    <  2:2501468/100‑1 (MQ=255)
                                                                                                 ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGa   <  1:3236433/100‑1 (MQ=255)
                                                                                                 ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGa   <  1:779290/100‑1 (MQ=255)
                                                                                                  tGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttcg  <  2:3236889‑M2/100‑69 (MQ=255)
                                                                                                  tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  <  2:863294/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277608‑277805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.