New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1396661NA (NA)15 (0.100) 11/164 NT 31.8% noncoding (618/1195 nt) IS5 repeat region
?NC_000913 1428197 = 35 (0.220)noncoding (598/1196 nt) IS5 repeat region

Only 100 of 221 total aligned reads displayed.

AGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGG  >  NC_000913/1428098‑1428296
                                                                                                   |                                                                                                    
gctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgacggcccacattggtgtcga                                                                                                      >  1:1075490‑M2/100‑100 (MQ=255)
gctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcga                                                                                                      <  1:3896571‑M2/1‑1 (MQ=255)
gctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcga                                                                                                      <  1:1416686‑M2/1‑1 (MQ=255)
gctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcga                                                                                                      >  2:1805566‑M2/100‑100 (MQ=255)
 ntcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  1:4074941‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  2:2569914‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  2:3895779‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  1:4297184‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     <  2:1380639‑M2/2‑1 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  2:1626180‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  2:1798553‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  1:2176474‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  1:2102779‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     <  1:2004488‑M2/2‑1 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  1:1885815‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     <  1:1514097‑M2/2‑1 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     >  1:1292088‑M2/99‑100 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     <  1:1600627‑M2/2‑1 (MQ=255)
 ctcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAt                                                                                                     <  2:2704758‑M2/2‑1 (MQ=255)
 ccgatctaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttagcatgaaggcccacattggtgtcgAt                                                                                                     <  2:4023651‑M2/2‑1 (MQ=255)
  tcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    <  1:2906380‑M2/3‑1 (MQ=255)
  tcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    <  1:1773535‑M2/3‑1 (MQ=255)
  tcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    <  1:4019447‑M2/3‑1 (MQ=255)
  tcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    >  1:3277167‑M2/98‑100 (MQ=255)
  tcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    <  2:1479989‑M2/3‑1 (MQ=255)
  tcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    <  1:413911‑M2/3‑1 (MQ=255)
  tcgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    <  1:1384865‑M2/3‑1 (MQ=255)
   cgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgacggcccacattggtgtcgATGc                                                                                                   >  1:2921958‑M2/97‑100 (MQ=255)
   cgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgAtgn                                                                                                   <  2:606285‑M2/4‑2 (MQ=255)
   cgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGc                                                                                                   >  2:3149077‑M2/97‑100 (MQ=255)
   cgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGc                                                                                                   <  1:1705602‑M2/4‑1 (MQ=255)
   cgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGc                                                                                                   <  2:2710572‑M2/4‑1 (MQ=255)
   cgaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGc                                                                                                   <  1:3968429‑M2/4‑1 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  <  1:1309810‑M2/5‑1 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  >  1:526637‑M2/96‑100 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  >  2:1350442‑M2/96‑100 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  <  2:1297844‑M2/5‑1 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  >  2:359852‑M2/96‑100 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  <  1:3560794‑M2/5‑1 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  <  2:139890‑M2/5‑1 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  <  2:2755613‑M2/5‑1 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  <  1:2531431‑M2/5‑1 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  >  2:471766‑M2/96‑100 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  >  2:579942‑M2/96‑100 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGcc                                                                                                  >  2:246471‑M2/96‑100 (MQ=255)
    gaccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacatgggtgtcgATGc                                                                                                   >  1:4033310‑M2/96‑99 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgcaggcccacattggtgtcgATGCCa                                                                                                 >  2:1547618‑M2/95‑100 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGc                                                                                                   <  1:420942‑M2/4‑1 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  2:2838848‑M2/95‑100 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 <  2:261220‑M2/6‑1 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 <  1:1837234‑M2/6‑1 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  1:690557‑M2/95‑100 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  2:931167‑M2/95‑100 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  1:3308517‑M2/95‑100 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  2:452050‑M2/95‑100 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 <  2:4260390‑M2/6‑1 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  2:3685367‑M2/95‑100 (MQ=255)
     accaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtctcgAtgcaa                                                                                                 >  2:4117982‑M2/95‑98 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                >  2:4229463‑M2/94‑100 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                >  2:2264967‑M2/94‑100 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                <  1:2226429‑M2/7‑1 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                <  2:1627089‑M2/7‑1 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                <  1:3212827‑M2/7‑1 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                >  2:754538‑M2/94‑100 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                >  1:4173771‑M2/94‑100 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                >  2:3411726‑M2/94‑100 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  1:3009997‑M2/94‑99 (MQ=255)
      ccaagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCa                                                                                                 >  1:2654761‑M2/94‑99 (MQ=255)
       caataacaaagagcagcaacgcaatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATg                                                                                                    <  2:3012415‑M2/3‑1 (MQ=255)
       caagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgatgcccag                                                                                               >  1:419701‑M2/93‑97 (MQ=255)
       caagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGccacg                                                                                               <  2:4073510‑M2/8‑3 (MQ=255)
       caagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCaa                                                                                                >  1:947272‑M2/93‑99 (MQ=255)
        aagaacaaagagcagcaacgcgatccggagatgcatcagaccaagaaaggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGccacg                                                                                               >  1:903466‑M2/92‑97 (MQ=255)
                                                        ggcaatcagtggcactttggcatgaaggcccacattggtgtcgATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTtgc                                             >  1:1168296‑M2/44‑100 (MQ=255)
                                                            atcagtggcactttggcatgaaggcccacattggtgtcgATGCCAAGAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTtgctgc                                          >  1:1467276‑M2/40‑100 (MQ=255)
                                                               agtggcactttggcatgaaggcccacattggtgtcgATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCtt                                      >  2:165112‑M2/37‑100 (MQ=255)
                                                                  ggcactttggcatgaaggcccacattggtgtcgATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGt                                   >  2:29065‑M2/34‑100 (MQ=255)
                                                                   gcactttggcatgaaggcccacattggtgtcgATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGtt                                  >  1:792487‑M2/33‑100 (MQ=255)
                                                                    cactttggcatgaaggcccacattggtgtcgATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTc                                 >  2:3817564‑M2/32‑100 (MQ=255)
                                                                      ctttggcatgaaggcccacattggtgtcgATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCtt                               >  2:171837‑M2/30‑100 (MQ=255)
                                                                        ttggcatgaaggcccacattggtgtcgATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTgg                             >  1:2417371‑M2/28‑100 (MQ=255)
                                                                            cATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTaga                         <  2:1115118/100‑1 (MQ=32)
                                                                                gACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTg                     >  2:3228398/1‑100 (MQ=33)
                                                                                gACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTg                     <  2:3276856/100‑1 (MQ=33)
                                                                                  cacCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTggg                   <  1:3474628/100‑1 (MQ=33)
                                                                                   acCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTGCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGt                  <  2:2105305/100‑1 (MQ=18)
                                                                                    ccAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTg                 <  2:2490139/100‑1 (MQ=33)
                                                                                    ccAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTg                 >  1:483275/1‑100 (MQ=33)
                                                                                    ccAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTg                 >  1:1224537/1‑100 (MQ=33)
                                                                                        tgtgGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTc             >  2:1985188/1‑100 (MQ=33)
                                                                                           gggCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAat          >  2:307856/1‑100 (MQ=33)
                                                                                            ggCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAatg         <  2:437046/100‑1 (MQ=33)
                                                                                             gCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTATTATTGGTAGAGCTGGGTGCCTCAatga        >  2:3464378/1‑100 (MQ=12)
                                                                                                ttCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtgg     >  1:2368478/1‑100 (MQ=33)
                                                                                                 tCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggt    >  1:3043959/1‑100 (MQ=32)
                                                                                                 tCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtgg     <  1:3523274/99‑1 (MQ=33)
                                                                                                  cATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTACTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg   <  2:1042503/100‑1 (MQ=18)
                                                                                                  cATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCGCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg   <  1:4339585/100‑1 (MQ=18)
                                                                                                   ATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtgg  <  1:3114732‑M2/100‑1 (MQ=255)
                                                                                                   ATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg   >  1:3075049‑M2/1‑99 (MQ=255)
                                                                                                   |                                                                                                    
AGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGG  >  NC_000913/1428098‑1428296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.