New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1432761NA (NA)12 (0.080) 7/170 NT NA coding (351/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432785 NA (NA)coding (375/576 nt) tfaR Rac prophage; putative tail fiber assembly protein

AAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACC  >  NC_000913/1432695‑1432816
                                                                                          |                               
aactgttcgcTGGTCATTGCCACAAGGCGCGTTTCAGAAGTGGGAAAGAACAGCCTGGGGGACAGGTACGGAAGCAGAAAAACTGTTCCGGATACggg                          >  1:2133171/10‑98 (MQ=0)
                         ggggggtggcAGAGGTGGAAGGGCAGAGGCTGGGTGAAGGAGACGGAAGGAGAAAAAGTGTTCCGGAGCCGGGAGGCGGAAGAAACAAAAAACAAcc  <  1:3555686/88‑1 (MQ=1)
                                                                                          |                               
AAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACC  >  NC_000913/1432695‑1432816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.