| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2304654 = | NA (NA) | 17 (0.120) | 10/164 | NT | 100% | noncoding (238/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 2304670 = | 0 (0.000) | noncoding (254/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCT > NC_000913/2304571‑2304748 | gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta < 1:3908771‑M2/1‑1 (MQ=255)gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgcgccttagatgtcggatgcggcgtaaccgcctta < 1:2887789‑M2/1‑1 (MQ=255) tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt > 2:706861‑M2/99‑100 (MQ=255) cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt < 1:2118615/100‑1 (MQ=11) cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGCCGGATAAGGCGGCTACGCCCCac > 2:3976539/1‑99 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc < 2:687025‑M2/3‑1 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 2:3979860‑M2/98‑100 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 2:3514970‑M2/98‑100 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 1:2267076‑M2/98‑100 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc < 1:8410‑M2/3‑1 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcatgggcgttagatgtcggatgcggcgtaaccgccttATc > 1:346914‑M2/98‑100 (MQ=255) ggagcacgccgcagcgggggaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc < 1:3943945‑M2/3‑1 (MQ=255) gagcacttcacagcggtgtaggcctgatgggacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 2:1607014‑M2/4‑1 (MQ=255) gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc > 2:2208743‑M2/97‑100 (MQ=255) gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 2:2201419‑M2/4‑1 (MQ=255) gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgtgagatgtcggatgcggcgtaaccgccttATcc < 1:3474759‑M2/4‑1 (MQ=255) agcacttcccagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 2:955196‑M2/5‑1 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg > 2:1948013‑M2/96‑100 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 2:134711‑M2/5‑1 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg > 2:1229166‑M2/96‑100 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg > 1:4380163‑M2/96‑100 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 1:1670732‑M2/5‑1 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg > 2:3865979‑M2/95‑99 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa > 1:687023‑M2/95‑100 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa > 1:1101324‑M2/95‑100 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa < 2:1142274‑M2/6‑1 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa > 2:4073240‑M2/95‑100 (MQ=255) gcacttcacagcggggtagggctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 2:4000443‑M2/4‑1 (MQ=255) gcacgtcgcagcggtggagtgctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 1:655765‑M2/4‑1 (MQ=255) cgatctcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa < 1:2045796‑M2/6‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 2:1101328‑M2/7‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 2:3222113‑M2/7‑1 (MQ=255) tcgcagctgggtagggcggataagacgcgccagcgtcgcatcaggcaacctgcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa < 1:3680274‑M2/6‑1 (MQ=255) cggagctgtggaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAtccgccc < 1:1879795‑M2/8‑4 (MQ=255) cacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttatccgaagatcg > 2:2045804‑M2/89‑94 (MQ=255) taagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagaggtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGcc < 1:3319430‑M2/30‑1 (MQ=255) gttagatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCcacctc > 1:1173359‑M2/31‑96 (MQ=255) ggatgtcggatgcggcgtaaccgccttATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCCACCGCTGTGa > 1:3810681‑M2/28‑100 (MQ=255) agatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa > 2:739845‑M2/28‑100 (MQ=255) gatgtcggatgcggcgtaaccgccttATCCGACATCTAAGGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa > 1:1975538‑M2/27‑100 (MQ=255) gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa > 2:2238490‑M2/27‑100 (MQ=255) gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa > 2:3889563‑M2/27‑100 (MQ=255) ttgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAg < 2:3078041‑M2/75‑1 (MQ=255) atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAg > 2:323044‑M2/26‑100 (MQ=255) atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAg > 2:3937199‑M2/26‑100 (MQ=255) tgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCACGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTccaccgctccgccgt > 1:3846876‑M2/25‑93 (MQ=255) tgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAaga > 1:3078024‑M2/25‑99 (MQ=255) tgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGt > 2:3352333‑M2/25‑100 (MQ=255) gtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTg > 2:3245808‑M2/24‑100 (MQ=255) tcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc > 1:1028796‑M2/23‑100 (MQ=255) tcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc > 2:33968‑M2/23‑100 (MQ=255) cggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCt < 1:3937174‑M2/79‑1 (MQ=255) | GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCT > NC_000913/2304571‑2304748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |