New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2511352 =NA (NA)11 (0.080) 6/164 NT NA noncoding (1/88 nt) REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2662541 NA (NA)noncoding (233/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 178 total aligned reads displayed.

TCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGG  >  NC_000913/2662442‑2662640
                                                                                                   |                                                                                                   
tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg                                                                                                     <  2:1469563/100‑1 (MQ=11)
 cgctgTAGGCCTGATAGGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    >  2:3312174‑M2/3‑99 (MQ=255)
 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGg                                                                                                    >  1:4039014‑M2/1‑99 (MQ=255)
 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    >  2:314827‑M2/1‑99 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGTTGCGGCGGGAACGCCTTATACGAGCTACGGATCTGTTCAGTGTAGgcc                                                                                                  <  1:2084891‑M2/100‑4 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  >  1:2796931‑M2/1‑97 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  >  1:801791‑M2/1‑97 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  <  2:1378107‑M2/100‑4 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACCGTAGgcc                                                                                                  >  2:2302698‑M2/1‑97 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTAGGATGCGGCGTGAACGCCTTTTCCGACCTTCGGTTCTGTTAACTGTAGgtc                                                                                                  <  1:2484117‑M2/100‑4 (MQ=255)
    tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcct                                                                                                 >  2:3318196‑M2/1‑96 (MQ=255)
    tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcct                                                                                                 <  2:1046233‑M2/100‑5 (MQ=255)
    tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcct                                                                                                 >  2:3060761‑M2/1‑96 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCTCTGTAGgcctg                                                                                                >  1:2304330‑M2/1‑95 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                >  2:4356136‑M2/1‑95 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                >  2:1709225‑M2/1‑95 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                >  2:2939720‑M2/1‑95 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                >  2:2568942‑M2/1‑95 (MQ=255)
      tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctga                                                                                               <  2:2232986‑M2/100‑7 (MQ=255)
       aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgat                                                                                              >  2:3791121‑M2/1‑93 (MQ=255)
                             cgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatc                                                                        >  1:1147282‑M2/1‑71 (MQ=255)
                              ttccgatctggCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatca                                                                       >  2:3428365‑M2/6‑70 (MQ=255)
                                cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcagg                                                                     >  2:2704416‑M2/1‑68 (MQ=255)
                                 gCATCAGGCAATGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggc                                                                    >  2:3017590‑M2/1‑67 (MQ=255)
                                 gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggc                                                                    >  1:3298601‑M2/1‑67 (MQ=255)
                                     cAGGCAACGGCTGTCGTATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcctac                                                                >  1:1720664‑M2/1‑63 (MQ=255)
                                            cGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa                                                         >  1:3609594/1‑100 (MQ=31)
                                            cGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa                                                         <  2:2075104/100‑1 (MQ=31)
                                            cGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa                                                         >  2:3678735/1‑100 (MQ=31)
                                             ggCTGTCGGATGCGGCGTGAACGACTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGGCGCATCAGGCAACGGCTGTTAt                                                        <  2:2850383/100‑1 (MQ=12)
                                              gCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt                                                       >  2:3131625/1‑100 (MQ=33)
                                              gCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt                                                       <  2:769080/100‑1 (MQ=33)
                                              gCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt                                                       >  1:620358/1‑100 (MQ=33)
                                               cTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                      >  2:851125/1‑100 (MQ=35)
                                               cTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                      <  2:4110195/100‑1 (MQ=35)
                                               cTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                      >  1:1286388/1‑100 (MQ=35)
                                                tGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                     <  2:1147152/100‑1 (MQ=35)
                                                 gTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCgg                                                    <  1:912042/100‑1 (MQ=38)
                                                 gTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCgg                                                    <  2:1891896/100‑1 (MQ=38)
                                                 gTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                     <  2:252666/99‑1 (MQ=35)
                                                 gTCGGATAAGGCGTTCACGCCGCATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                     >  1:3564104/1‑99 (MQ=11)
                                                   cGGATGCGGCGTGAACGCCTGATCCGACGTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGc                                                   <  1:717446/99‑1 (MQ=255)
                                                    ggATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCt                                                 >  2:560610/1‑100 (MQ=40)
                                                     gATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt                                                <  2:2331528/100‑1 (MQ=255)
                                                      aTGCGGCGTGAACGCCTTATCTGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                          >  1:3006053/1‑89 (MQ=14)
                                                      aTGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  2:727438/100‑1 (MQ=255)
                                                      aTGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  1:2392626/100‑1 (MQ=255)
                                                      aTGCGGCATGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  1:3186370/100‑1 (MQ=255)
                                                       tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                     >  1:4314611/1‑93 (MQ=35)
                                                       tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  2:377449/99‑1 (MQ=255)
                                                       tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt                                              >  1:3367198/1‑100 (MQ=255)
                                                        gcggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  1:3417759/98‑1 (MQ=255)
                                                         cggcgTGAACGCCTTATCCGACCTCCGGTTCTGTTCACTGTAGCGCTGATAAGACGCCTTACGCGTCGCATCCGGCAACGGCTGGTATTCGGCCTTGGTa                                            >  1:3807408/1‑100 (MQ=14)
                                                         cggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCATGCAACGGCTGTTATTCGGCCTTGTTa                                            <  2:2674636/100‑1 (MQ=255)
                                                         cggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTa                                            >  2:2148761/1‑100 (MQ=255)
                                                          ggcgTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                           <  1:1500118/100‑1 (MQ=255)
                                                          ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                           >  2:1931884/1‑100 (MQ=255)
                                                           gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                          <  2:1177813/100‑1 (MQ=255)
                                                            cgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt                                         <  2:225634/100‑1 (MQ=255)
                                                             gTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt                                        <  2:2094312/100‑1 (MQ=255)
                                                              tGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt                                       <  2:3035453/100‑1 (MQ=255)
                                                               gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                      >  1:979009/1‑100 (MQ=255)
                                                               gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                      <  2:4314642/100‑1 (MQ=255)
                                                                 aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAt                                     >  1:1558063/1‑99 (MQ=255)
                                                                  cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                   <  1:1504180/100‑1 (MQ=255)
                                                                    ccgcaTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg                                 <  1:4402504/96‑1 (MQ=255)
                                                                    ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                  >  1:3800839/1‑99 (MQ=255)
                                                                     cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                <  2:2022443/100‑1 (MQ=255)
                                                                        aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCtgctgc                             <  2:3210242/100‑1 (MQ=255)
                                                                         tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct                            >  2:2713318/1‑100 (MQ=255)
                                                                          ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc                           >  2:1310469/1‑100 (MQ=255)
                                                                          ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc                           <  2:2604884/100‑1 (MQ=255)
                                                                          ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc                           >  2:77824/1‑100 (MQ=255)
                                                                              ccTAGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                       <  1:3510949/100‑1 (MQ=255)
                                                                              ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                       <  2:3063358/100‑1 (MQ=255)
                                                                               cTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCCCactcg                      >  1:204709/1‑96 (MQ=255)
                                                                                tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGa                     >  1:1823254/1‑100 (MQ=255)
                                                                                 aCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa                    >  2:2629093/1‑100 (MQ=255)
                                                                                  cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   >  1:1023057/1‑100 (MQ=255)
                                                                                     ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa                <  1:2572375/100‑1 (MQ=255)
                                                                                      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg               <  1:664948/100‑1 (MQ=255)
                                                                                       cTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGa              >  2:3519957/1‑100 (MQ=255)
                                                                                       cTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGa              >  2:312257/1‑100 (MQ=255)
                                                                                        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa             >  1:1961862/1‑100 (MQ=255)
                                                                                        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa             >  2:3867284/1‑100 (MQ=255)
                                                                                        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa             >  1:2254512/1‑100 (MQ=255)
                                                                                         gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt            >  2:3822274/1‑100 (MQ=255)
                                                                                         gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt            >  1:1236356/1‑100 (MQ=255)
                                                                                         gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCAGACGGCCCGGTAACCTTTATTCTGCCCCTCAATAGAGGCCAg               >  1:925475/1‑97 (MQ=17)
                                                                                           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATcc          <  2:2929201/100‑1 (MQ=255)
                                                                                             aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg        <  2:3601206/100‑1 (MQ=255)
                                                                                             aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg        >  2:703617/1‑100 (MQ=255)
                                                                                              cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccccc       <  2:2992379/100‑3 (MQ=255)
                                                                                                gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCgcgc     <  2:353099/100‑1 (MQ=255)
                                                                                                gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCgcgc     >  2:426351/1‑100 (MQ=255)
                                                                                                  aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAg   >  2:1405926/1‑100 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCaag  <  2:2988830/100‑3 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg  >  1:3023474/1‑100 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg  >  2:1319926/1‑100 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg  >  2:3257135/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGG  >  NC_000913/2662442‑2662640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.