New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620220NA (NA)26 (0.180) 11/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCAC  >  NC_000913/3620156‑3620354
                                                                                                   |                                                                                                   
tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                     >  2:2656699‑M2/1‑100 (MQ=255)
tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTCTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                     >  1:3096597‑M2/1‑100 (MQ=255)
tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGGGCGCAGCTTTACTTACGATGCTAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                     >  1:3500137‑M2/1‑100 (MQ=255)
tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGGGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                     >  1:1818886‑M2/1‑100 (MQ=255)
                                    gcAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctg                                                                 <  2:2367396‑M2/100‑37 (MQ=255)
                                    gcAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctg                                                                 <  2:2367775‑M2/100‑37 (MQ=255)
                                             cttacGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccact                                                        <  1:243850‑M2/100‑46 (MQ=255)
                                                          aTACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacacc                                           <  1:3646839‑M2/100‑59 (MQ=255)
                                                            aCCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccac                                         <  2:3127152‑M2/100‑61 (MQ=255)
                                                            aCCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccac                                         <  2:4360971‑M2/100‑61 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtctttatcatcgtacggaaagctgcgcacctgtttgccactacggtcatacaccacc                                        <  1:4311105‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcccctgtttgccactacggtcatacaccacc                                        <  1:3993884‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                        <  1:3404715‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                        <  2:2368967‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                        <  2:1360125‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                        <  1:551877‑M2/100‑62 (MQ=255)
                                                              cGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccg                                       <  1:224992‑M2/100‑63 (MQ=255)
                                                              cGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccg                                       <  1:474941‑M2/100‑63 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                      <  1:54553‑M2/100‑64 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                      <  2:4378965‑M2/100‑64 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccg                                       <  2:1413864‑M2/99‑63 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACAGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                      <  2:105654‑M2/100‑64 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                     <  1:2743257‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                     <  2:3156621‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                     <  2:3059008‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                     <  2:58141‑M2/100‑65 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcca                                    <  2:4268799‑M2/100‑66 (MQ=255)
                                                                  gCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccag                                   <  2:3257462‑M2/100‑67 (MQ=255)
                                                                  gCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccag                                   <  1:3526564‑M2/100‑67 (MQ=255)
                                                                     ggATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttc                                <  2:789909‑M2/100‑70 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc       <  2:4088282‑M2/100‑95 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc       <  1:1325054‑M2/100‑95 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc       >  2:1918670‑M2/1‑6 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc       >  2:1879974‑M2/1‑6 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      >  2:3790042‑M2/1‑5 (MQ=255)
                                                                                               cggccccggtatttagcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      >  2:4331267‑M2/1‑5 (MQ=255)
                                                                                                ggccccggtatttatcatcgtcagtaaagctgcgcacctgtgtgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac     >  1:1586573‑M2/1‑4 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac     >  1:2578280‑M2/1‑4 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac     <  2:3126979‑M2/100‑97 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac     <  2:3263265‑M2/100‑97 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac     <  2:21336‑M2/100‑97 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctggttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac     <  1:123177‑M2/100‑97 (MQ=255)
                                                                                                 gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc    >  2:3353740‑M2/1‑3 (MQ=255)
                                                                                                 ctcccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc    >  2:3723688‑M2/3‑3 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca   <  1:4201018‑M2/100‑99 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca   <  1:575313‑M2/100‑99 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca   <  2:4270714‑M2/100‑99 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca   <  1:1492083‑M2/100‑99 (MQ=255)
                                                                                                   cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccag  <  2:3729446‑M2/100‑100 (MQ=255)
                                                                                                   cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccag  <  1:3723664‑M2/100‑100 (MQ=255)
                                                                                                   cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccag  <  2:1906982‑M2/100‑100 (MQ=255)
                                                                                                   cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccag  <  2:2821934‑M2/100‑100 (MQ=255)
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TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCAC  >  NC_000913/3620156‑3620354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.