New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4317917 =NA (NA)19 (0.130) 7/164 NT NA noncoding (1/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4317949 = NA (NA)noncoding (33/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 252 total aligned reads displayed.

GCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGA  >  NC_000913/4317850‑4318048
                                                                                                   |                                                                                                   
gcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     >  2:1725422‑M1/68‑100 (MQ=255)
gCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     >  2:2490832/1‑100 (MQ=255)
gCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     <  2:3063183/100‑1 (MQ=255)
gCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     >  1:3570366/1‑100 (MQ=255)
  tGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTa                                                                                                   <  2:70802/100‑1 (MQ=255)
   ggTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTAc                                                                                                  >  2:2327564/1‑100 (MQ=255)
      gCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACggg                                                                                               <  1:3412426/100‑1 (MQ=255)
         ggATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAg                                                                                            <  1:1380619/100‑1 (MQ=255)
         ggATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAg                                                                                            >  2:2200935/1‑100 (MQ=255)
          gccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGggatc                                                                                           >  2:2983822‑M1/58‑98 (MQ=255)
          gATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgc                                                                                           >  2:2863957/1‑100 (MQ=255)
           aTGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcg                                                                                          <  2:318583/100‑1 (MQ=255)
             gAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcg                                                                                          >  1:2668619/1‑98 (MQ=255)
                 gTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTg                                                                                    >  2:654500/1‑100 (MQ=255)
                 gTTTTACTGACGTTTGGTACGTTAATCATTTTGCGCCTCGTGGTTCGTGTATCGGATGCGACGCTGACGCGGCTTATCCGACCGACGGGGAGCGCa                                                                                        >  1:3644349/1‑96 (MQ=37)
                   tttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa                                                                                  <  2:1146794/100‑1 (MQ=255)
                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                                                              >  2:399677/1‑100 (MQ=255)
                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                                                              >  2:360021/1‑100 (MQ=255)
                        tGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCg                                                                             <  2:1793326/100‑1 (MQ=255)
                          aCGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGa                                                                           <  2:280785/100‑1 (MQ=255)
                           cGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGAt                                                                          <  1:4376278/100‑1 (MQ=255)
                             ttttGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATaa                                                                        >  1:1576614/1‑100 (MQ=255)
                              tttGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAg                                                                       >  2:1741182/1‑100 (MQ=255)
                              tttGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTAGCCGACCTCCGGGGAGCGCCTTTGTAGGCCGGAGAAg                                                                       >  1:4296817/1‑100 (MQ=37)
                                tGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGc                                                                     >  2:2583771/1‑100 (MQ=255)
                                tGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGc                                                                     <  2:4103699/100‑1 (MQ=255)
                                 gTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCg                                                                    <  2:3686663/100‑1 (MQ=255)
                                   aCGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGtt                                                                  <  1:3613658/100‑1 (MQ=255)
                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                                                 <  1:3697230/100‑1 (MQ=255)
                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                                                 >  2:2622497/1‑100 (MQ=255)
                                     gTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGAtgcggcgtaaa                                                                <  1:4197758/100‑11 (MQ=255)
                                     gTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTa                                                                >  2:1375592/1‑100 (MQ=255)
                                     gTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTa                                                                >  1:700098/1‑100 (MQ=255)
                                     gTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATACGACCTACGGGGGGCGCATTTGTAGGCCGGATAAGGCGTTTa                                                                >  1:1706237/1‑100 (MQ=255)
                                      ttAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAc                                                               <  1:3421311/100‑1 (MQ=255)
                                       tAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcg                                                              <  1:262795/100‑1 (MQ=255)
                                       tAATCATTTTTCGCCTCGTGGTGCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCTGATAAGGCGTTTAcg                                                              <  2:1060143/100‑1 (MQ=255)
                                         aTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                            <  2:3150523/100‑1 (MQ=255)
                                         aTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                            <  2:33388/100‑1 (MQ=255)
                                          tCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgccg                                                           <  1:4152725/100‑1 (MQ=255)
                                            aTTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgccg                                                           >  1:3935227/1‑98 (MQ=255)
                                            aTTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                         >  1:331897/1‑100 (MQ=255)
                                            aTTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                         <  1:1542465/100‑1 (MQ=255)
                                            aTTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                         >  2:4398553/1‑100 (MQ=255)
                                              ttttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTAACGCCGCAt                                                        >  2:3954141/1‑99 (MQ=255)
                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGATCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                      >  2:385422/1‑100 (MQ=255)
                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAAcgccttatcc                                                      <  2:198300/100‑7 (MQ=21)
                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAACGCCTTATcc                                                      <  1:816556/100‑1 (MQ=21)
                                                 tCGCCTGGTGGTGCGGGTGTCGGATTCGACGCGGACGCGTCTTATTCGACCTACGGGGAGCGCATTTGTAGGGCGGATAAGGCGTTTACGCCGCATCCgg                                                    <  1:1440240/100‑1 (MQ=18)
                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                  >  1:1938463/1‑100 (MQ=255)
                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                  >  1:1866483/1‑100 (MQ=255)
                                                    ccTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAc                                                 >  2:1407717/1‑100 (MQ=255)
                                                    ccTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAc                                                 >  2:4063610/1‑100 (MQ=255)
                                                     cTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGccta                                                <  1:2110791/100‑4 (MQ=18)
                                                     cTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAcc                                                <  1:3868332/100‑1 (MQ=255)
                                                       cGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAcc                                                >  1:1318494/1‑98 (MQ=255)
                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTc                                           >  1:1977778/1‑100 (MQ=255)
                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTc                                           >  1:3267263/1‑100 (MQ=255)
                                                             tCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAAt                                        <  1:1081311/100‑1 (MQ=255)
                                                               gggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTc                                      >  2:3276929/1‑100 (MQ=255)
                                                                ggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAGTTGTAGGCCGGATGAGACGTTTACGCCGCATCCGGCACCGGCTCAATTCt                                     >  2:3085617/1‑100 (MQ=255)
                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  2:3372933/100‑1 (MQ=255)
                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  1:1000496/100‑1 (MQ=255)
                                                                 aggtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    >  1:1981484‑M2/35‑100 (MQ=255)
                                                                  tgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGc                                   <  2:3309496/100‑1 (MQ=255)
                                                                  ggtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGc                                   >  2:3486090‑M2/34‑100 (MQ=255)
                                                                  ggtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGc                                   >  1:831914‑M2/34‑100 (MQ=255)
                                                                   gtcggataagacgcgtcagcgtcttatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  >  1:3486455‑M2/33‑100 (MQ=255)
                                                                   gtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATCAGGCGTTTACGCCGCATCCGGCACCGCCTCAATTCTGCa                                  >  1:992621‑M2/33‑100 (MQ=255)
                                                                   GTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  >  2:1241508‑M1/1‑100 (MQ=255)
                                                                    TCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaa                                 >  1:3507221‑M1/1‑100 (MQ=255)
                                                                     CGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGATTACGCCCCATCCGGCACCGGCTCAATTCTGCa                                  <  2:2103568‑M1/98‑1 (MQ=255)
                                                                      ggttacgacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTCTACGCCGCATCCGGCACCGGCTCAACTCTGCaaa                                >  1:2442344‑M2/30‑99 (MQ=255)
                                                                      ggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               >  2:832814‑M2/30‑100 (MQ=255)
                                                                      ggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               >  2:2773278‑M2/30‑100 (MQ=255)
                                                                      GGATGCGACGCTGACGCGTCTTATCCAACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               <  2:2683645‑M1/100‑1 (MQ=255)
                                                                       gataagacgcgtcagcgtcgcatccgacCTACGGGGCGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAAc                              >  2:2379947‑M2/29‑100 (MQ=255)
                                                                       GATGCGACGCTGACGCGTCTTGTCCGCCCTGCGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGcaaaan                              >  2:1015546‑M1/1‑99 (MQ=255)
                                                                        ATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAAcc                             >  1:3101699‑M1/1‑100 (MQ=255)
                                                                         TGCGACGCTGACGCGTCTTATCCGACCTACGGGGCGCGCATTTGTAGGCCGGATCAAGCGTTTACGCCGCATCCGGCACCGGCTCAATtctgcaatgccg                            <  1:628143‑M1/100‑6 (MQ=255)
                                                                          gCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGa                           <  1:1164531/100‑1 (MQ=255)
                                                                           cGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGAt                          >  2:2729051/1‑100 (MQ=255)
                                                                           cGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGAt                          <  2:628642/100‑1 (MQ=255)
                                                                           cGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGAt                          >  2:479057/1‑100 (MQ=255)
                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATg                         <  1:2895063/100‑1 (MQ=255)
                                                                              cGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGac                       >  1:124118/1‑100 (MQ=255)
                                                                                cTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGacac                     <  1:2419584/100‑1 (MQ=255)
                                                                                cTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGacac                     >  1:1656609/1‑100 (MQ=255)
                                                                                  gACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACca                   >  2:4311084/1‑100 (MQ=255)
                                                                                  gACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACca                   >  1:1202879/1‑100 (MQ=255)
                                                                                      cgTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGTCACCGGCTCAATTCTGCAAAACCGATGACACcagca                >  1:3060344/1‑99 (MQ=255)
                                                                                          ttATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgt           <  2:746756/100‑1 (MQ=255)
                                                                                           tATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          >  1:2369708/1‑100 (MQ=255)
                                                                                           tATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          <  2:3454394/100‑1 (MQ=255)
                                                                                           tATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          >  2:2060853/1‑100 (MQ=255)
                                                                                           tATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          <  2:803785/100‑1 (MQ=255)
                                                                                              ccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGta        <  1:1410967‑M2/94‑1 (MQ=255)
                                                                                               cgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGtata      <  2:941634‑M2/96‑1 (MQ=255)
                                                                                               cgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGtata      <  2:2189315‑M2/96‑1 (MQ=255)
                                                                                                   cTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGga  <  1:1039897/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGA  >  NC_000913/4317850‑4318048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.