BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 349783	135 (0.850)	30 (0.210)	7/164	NT	18.7%	noncoding (179/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
*	?	NC_000913	= 349845	137 (0.940)	30 (0.210)	7/164	NT	18.7%	noncoding (241/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

Only 100 of 205 total aligned reads displayed.

ACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGA  >  NC_000913/349746‑349944

aCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAg                                                                                                     >  1:368704/1‑100 (MQ=32)

aCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAg                                                                                                     <  2:2688318/100‑1 (MQ=33)

aCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAg                                                                                                     <  2:2371932/100‑1 (MQ=33)

  tGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgt                                                                                                   <  1:141276‑M2/100‑3 (MQ=255)

     aGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgtcgg                                                                                                <  2:3209875‑M2/100‑6 (MQ=255)

       gTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgtcggat                                                                                              <  2:2459711‑M2/100‑8 (MQ=255)

       gTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgtcggat                                                                                              >  2:3653958‑M2/1‑93 (MQ=255)

        tCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATa                                                                                             <  2:4244919/100‑1 (MQ=33)

        tCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTAGCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATa                                                                                             <  2:3095085/100‑1 (MQ=18)

          ggATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAg                                                                                           >  2:3912035/1‑100 (MQ=32)

          ggATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAg                                                                                           <  1:1131952/100‑1 (MQ=32)

          ggATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGACGCTGACGCGACTCATCAGGCCTACGGGGCGCACTGAACTGTAGgaaggata                                                                                             <  1:3395565‑M2/98‑9 (MQ=255)

             tAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACg                                                                                        >  1:1444871/1‑100 (MQ=32)

               aGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCa                                                                                      >  1:1900243/1‑100 (MQ=32)

               aGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCa                                                                                      <  1:2603038/100‑1 (MQ=33)

                 aCGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATa                                                                                    <  1:3341717/100‑1 (MQ=33)

                    cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCg                                                                                 >  1:1066600/1‑100 (MQ=32)

                    cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCg                                                                                 >  2:2661192/1‑100 (MQ=33)

                    cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCg                                                                                 <  2:700447/100‑1 (MQ=33)

                    cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCACTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCg                                                                                 >  1:2356815/1‑100 (MQ=17)

                       aGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCg                                                                              <  2:1935630/100‑1 (MQ=33)

                        gCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTc                                                                               <  1:2134845/98‑1 (MQ=32)

                        gCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGc                                                                             >  2:1494921/1‑100 (MQ=33)

                          gTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCAt                                                                           >  1:4360418/1‑100 (MQ=32)

                          gTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCAt                                                                           >  2:949041/1‑100 (MQ=33)

                           tCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgtcggatgcgacgctatgcgtcttatc                                                                          >  2:218237‑M2/1‑73 (MQ=255)

                           tCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGgtcggatgcgacgctatgcgtcttatc                                                                          >  2:26349‑M2/1‑73 (MQ=255)

                            cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgtcggataagacgctatgcgtcttatcc                                                                         >  2:1895261‑M2/1‑72 (MQ=255)

                            cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgtcggatgcgacgctatgcgtcttatcc                                                                         >  1:2579544‑M2/1‑72 (MQ=255)

                            cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATcc                                                                         <  2:3579642/100‑1 (MQ=33)

                            cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATcc                                                                         <  2:1808497/100‑1 (MQ=33)

                             gtatcCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGgtcggatgcgacgctatgcgtcttatccg                                                                        >  2:709‑M2/3‑71 (MQ=255)

                              cATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCg                                                                        >  1:1708102/1‑99 (MQ=32)

                              cATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGa                                                                       <  2:1392994/100‑1 (MQ=33)

                               aTCCGCCGACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGAc                                                                      <  2:4065609/100‑1 (MQ=12)

                               aTCCGACAGCCGATGCCTGAGGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGAc                                                                      <  1:3549588/100‑1 (MQ=12)

                               aTCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGACCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGAc                                                                      >  1:2261796/1‑100 (MQ=17)

                               aTCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGAc                                                                      >  1:197284/1‑100 (MQ=32)

                                ttcgaCAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGgtcggatgcgacgccatccgtcttatccgacc                                                                     >  2:3883641‑M2/3‑68 (MQ=255)

                                tCCGACCACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGgtcggatgcgacgctatgcgtcttatccgacc                                                                     >  1:4182803‑M2/1‑68 (MQ=255)

                                tCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGgtcggatgcgacgctatgcgtcttatccgacc                                                                     >  2:4088045‑M2/1‑68 (MQ=255)

                                tCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGGTAAGACGCATAGCGTCGCAGCCGAc                                                                      >  2:3957828/1‑99 (MQ=12)

                                 ccGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACaa                                                                    >  2:1696361/1‑100 (MQ=33)

                                  cGACAACCGATGCCTGATGCGCCGCTGACGCTACTTATGAGGCCTACGGGGTGCACTGAACTGTAGGTCGAATAAGACGCATAGCGTCGCATCCGACAAc                                                                   <  1:722972/100‑1 (MQ=255)

                                  cGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAAc                                                                   >  2:2262748/1‑100 (MQ=33)

                                   gACAACCGATGCCTGATGCGCCTCTGACGCGACTTATCAGGCCTACGGGGGGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATcc                                                                         <  1:1921566/93‑1 (MQ=12)

                                   gACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAAcc                                                                  <  2:860373/100‑1 (MQ=32)

                                    aCAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCg                                                                 <  1:4344543/100‑1 (MQ=32)

                                       aCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTTGGATAAGACGCATAGCGTCGCATCCGACAACCGATg                                                              <  2:3111248/100‑1 (MQ=18)

                                       aCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATg                                                              >  2:3504071/1‑100 (MQ=33)

                                         cGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGcc                                                            <  1:4300131/100‑1 (MQ=32)

                                         cGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCACCCGACAACCGATGcc                                                            >  1:2922163/1‑100 (MQ=18)

                                              ccTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATg                                                       <  1:2083599/100‑1 (MQ=32)

                                               cTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcac                                                      >  2:4073266‑M2/1‑53 (MQ=255)

                                               cTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGcc                                                            >  1:846284/1‑94 (MQ=32)

                                                 gATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATgcgc                                                    <  1:3256256/100‑1 (MQ=32)

                                                 gATGCGCCGCGGACGCGACGTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATgcgc                                                    <  1:1671279/100‑1 (MQ=12)

                                                  aTGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGcgcc                                                   <  2:1474716/100‑1 (MQ=33)

                                                  aTGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGcgcc                                                   <  2:4317131/100‑1 (MQ=33)

                                                    gcgcCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGcgccgc                                                 <  2:1192724/100‑1 (MQ=33)

                                                     cgccgcTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGTCGCt                                                <  2:1049519/100‑1 (MQ=17)

                                                     cgccgcTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCt                                                <  2:228278/100‑1 (MQ=33)

                                                      gccgcTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGcgccgc                                                 <  1:2226596/98‑1 (MQ=32)

                                                      gccgcTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTg                                               <  1:1526499/100‑1 (MQ=33)

                                                        cgcTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGCTGCGCCGCTGAc                                             >  2:130397/1‑100 (MQ=18)

                                                         gcTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGTCGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAcg                                            <  1:2445685/100‑1 (MQ=17)

                                                          cTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAcgc                                           <  2:2726340/100‑1 (MQ=33)

                                                          cTGACGCGACTTATCAGGCCTACGGGGTGCACCGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAcgc                                           <  2:3875863/100‑1 (MQ=17)

                                                           tGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAcgcg                                          <  2:1021351/100‑1 (MQ=33)

                                                            gACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGa                                         >  2:660261/1‑100 (MQ=32)

                                                             aCGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGAc                                        <  2:4291286/100‑1 (MQ=33)

                                                             aCGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGAc                                        <  1:405014/100‑1 (MQ=32)

                                                              cgcgACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACt                                       >  1:2091566/1‑100 (MQ=32)

                                                              cgcgACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACt                                       >  2:2751956/1‑100 (MQ=32)

                                                               gcgACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGAc                                        <  1:287139/98‑1 (MQ=31)

                                                               gcgACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGACGCTGACGCGAc                                        >  1:1779292/1‑98 (MQ=14)

                                                                cgACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTa                                     <  2:1570882/100‑1 (MQ=11)

                                                                            ccTACGGGGTGAACTGAACTGTAGgtcggatgcgacgctatgcgtcttatccgacctacagttcagttcaccccgtaggcctgataagtcgcgtcagcgg                         >  2:4024443‑M2/1‑24 (MQ=255)

                                                                                    gTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaact                 <  1:3210491/100‑1 (MQ=32)

                                                                                    gTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaact                 <  2:1831701/100‑1 (MQ=32)

                                                                                     tGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactg                <  2:1331009/100‑1 (MQ=32)

                                                                                     tGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaacta                >  1:1829096/1‑99 (MQ=17)

                                                                                       cACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaa              >  1:4024415/1‑100 (MQ=32)

                                                                                        acgaagcTGTAGGGCGGTTAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaac             <  1:3534200/94‑1 (MQ=11)

                                                                                        aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaac             <  1:1097049/100‑1 (MQ=32)

                                                                                        aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaac             <  1:77036/100‑1 (MQ=33)

                                                                                        aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaac             <  2:3613789/100‑1 (MQ=33)

                                                                                        aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaac             <  2:3410534/100‑1 (MQ=33)

                                                                                         cTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTgaactgaact            >  2:3708707/1‑100 (MQ=32)

                                                                                         cTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGAGCCGCTGACGCGACTTCTCAGGCCTACGGGGcgaactga               >  2:3676650/1‑97 (MQ=255)

                                                                                           gAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGCTGGCTGATGCGCCGCTGACGCGACTAAACAGGGCTACGGGGTgaactgaact            >  1:2724708/1‑98 (MQ=11)

                                                                                           gAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGt          <  2:344533/100‑1 (MQ=33)

                                                                                             acaggaGGTCGGATAAGACGCAGTGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTgaactgaact            <  1:502800/91‑1 (MQ=11)

                                                                                             aCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAg        <  2:1657708/100‑1 (MQ=33)

                                                                                              cTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAgg       <  2:1102603/100‑1 (MQ=33)

                                                                                              cTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAgg       >  1:1204982/1‑100 (MQ=32)

                                                                                              cTGTAGGTCGGACAAGACGCATAGTCTGGCATCCGATAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGt          <  1:2816466/97‑1 (MQ=11)

                                                                                                gTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTc     >  2:416459/1‑100 (MQ=33)

                                                                                                gTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTc     >  2:2875321/1‑100 (MQ=33)

                                                                                                  aGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCgg   >  2:579336/1‑100 (MQ=33)

ACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGA  >  NC_000913/349746‑349944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.