Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,391,417 C→G 15.6% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,391,4170CG15.6% 407.1 / 58.9 152W30S (TGG→TCG) nuoNNADH:ubiquinone oxidoreductase, membrane subunit N
Reads supporting (aligned to +/- strand):  ref base C (72/55);  new base G (11/13);  total (84/68)
Fisher's exact test for biased strand distribution p-value = 3.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.53e-01

Only 100 of 156 total aligned reads displayed.

ACGTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTACG  >  NC_000913/2391318‑2391516
                                                                                                   |                                                                                                   
  gTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGTGTAGCGTTGAGGAAATGATTGCGTCGCCAc                                                                                                   <  1:797491/100‑1 (MQ=255)
       tAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAt                                                                                              <  1:4122520/100‑1 (MQ=255)
        aGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATg                                                                                             <  1:2044122/100‑1 (MQ=255)
         gcgcCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGTGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATgg                                                                                            <  1:2337778/100‑1 (MQ=255)
         gcgcCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtca                                                                                            <  2:3559521/100‑3 (MQ=255)
         gcgcCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATgg                                                                                            <  2:3979625/100‑1 (MQ=255)
           gcccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatt                                                                                          <  2:703614/100‑5 (MQ=255)
           gcccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGgag                                                                                          >  2:114803/1‑100 (MQ=255)
            cccgccTGGCCAACAAACCAGAGCGACACCAGCGCCGCGTTAAGCCCAATATCCGAGAGCGTAGCGTTGATGAAATGATTGCGTGGCGACGCAAtca                                                                                            <  1:3638842/97‑3 (MQ=255)
            cccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcattt                                                                                         <  2:646446/100‑6 (MQ=255)
            cccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcattt                                                                                         <  2:3873780/100‑6 (MQ=255)
            cccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGgaga                                                                                         >  2:3460282/1‑100 (MQ=255)
             ccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatttc                                                                                        <  2:3979714/100‑7 (MQ=255)
             ccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGagag                                                                                        <  2:306312/100‑1 (MQ=255)
             ccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGagag                                                                                        <  2:181988/100‑1 (MQ=255)
              cgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAAGAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatttcc                                                                                       <  1:1531403/100‑8 (MQ=255)
              cgccTCGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatttcc                                                                                       <  1:4370378/100‑8 (MQ=255)
               gccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCa                                                                                      <  1:3740695/100‑1 (MQ=255)
                 cTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatttcctca                                                                                    <  2:1939299/100‑11 (MQ=38)
                  tGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATca                                                                                   >  2:1552378/1‑100 (MQ=255)
                  tGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATca                                                                                   <  2:1414932/100‑1 (MQ=255)
                   ggCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcac                                                                                  >  1:910864/1‑100 (MQ=255)
                   ggCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATca                                                                                   <  2:603417/99‑1 (MQ=255)
                    gCCAACATACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcaca                                                                                 >  2:2310888/1‑100 (MQ=255)
                    gCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcaca                                                                                 >  2:2336116/1‑100 (MQ=255)
                    gCCAACAAACCAGAGAGAAACCAGCGCCGCGTTAAGCCCAATACCCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcaca                                                                                 <  1:3562537/100‑1 (MQ=255)
                     ccAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACaa                                                                                <  2:497480/100‑1 (MQ=255)
                      caacaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAac                                                                               >  2:167847/1‑100 (MQ=255)
                      caacaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAac                                                                               >  2:915952/1‑100 (MQ=255)
                      caacaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAac                                                                               >  2:3437261/1‑100 (MQ=255)
                       aacaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAacc                                                                              <  2:2795255/100‑1 (MQ=255)
                       aacaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAacc                                                                              >  2:3128440/1‑100 (MQ=255)
                         caaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATACCCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccac                                                                            <  1:73785/100‑1 (MQ=255)
                         caaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccac                                                                            >  2:2049096/1‑100 (MQ=255)
                           acccAGAGCGAAACCCGCGCCGCGCTAAGCCCAATAACCGAGCGCGAAACGCGGAGGAAATGATTGCGTCGCCACGCAACGGAGAGCATCACAaccacc                                                                           >  1:3029235/3‑99 (MQ=255)
                            aCCAGAGCGAAACCAGCGACGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACTaccac                                                                            >  1:1927045/1‑97 (MQ=255)
                              cAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGTAGAGCATCACAGCCACCACCg                                                                       <  1:4360545/100‑1 (MQ=255)
                               agagCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGt                                                                      >  2:1579572/1‑100 (MQ=255)
                               agagCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGt                                                                      >  2:3783995/1‑100 (MQ=255)
                                gagCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGATCGTAGCGTTGAGGAAATGATTGCGTCGCCACGTAATGGAGAGCATCACAACCACCACCGTc                                                                     <  1:795222/100‑1 (MQ=255)
                                gagCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGt                                                                      >  1:36590/1‑99 (MQ=255)
                                gagCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTc                                                                     <  1:2100969/100‑1 (MQ=255)
                                 agCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCa                                                                    <  2:2701134/100‑1 (MQ=255)
                                  gCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCaa                                                                   >  2:3811259/1‑100 (MQ=255)
                                    gAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGATGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGc                                                                 >  1:2268694/1‑100 (MQ=255)
                                     aaaCCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGcc                                                                <  2:3692990/100‑1 (MQ=255)
                                       aCCAGCGCCGCGTTAAGCCCAATAACCGAGAGAGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCcga                                                              >  1:1835206/1‑100 (MQ=255)
                                        ccAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCcgac                                                             <  2:2411700/100‑1 (MQ=255)
                                        ccAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCcgac                                                             <  1:1952172/100‑1 (MQ=255)
                                        ccAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCcgac                                                             >  1:3177380/1‑100 (MQ=255)
                                        ccAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTCGAGGAAATGACTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCcgac                                                             >  1:136295/1‑100 (MQ=255)
                                           gcgcGGCGTTAAGCCCAATACCCGAGAGCCGAGCGTTGAGGAAATGATGGCGTCGCCACGCAATGGCGAGCATCACAACCACCTCCGTCAAGc                                                                 <  1:3830407/93‑1 (MQ=255)
                                            cgccgcGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATc                                                         >  1:271181/1‑100 (MQ=255)
                                               cgcgTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGc                                                      <  2:3628321/100‑1 (MQ=255)
                                               cgcgTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGc                                                      >  1:3010671/1‑100 (MQ=255)
                                               cgcgTTAAGCCCAATAACCGAGAGCGTAGCGTCGAGGAAATGATTGCGTCGCCGCGGAAGGGAGAGCAGCACAGCCACCAGCGTCAAGCCGACGATGAGc                                                      >  1:2099012/1‑100 (MQ=255)
                                                 cgTTAAGCCCAATAACCGAGAGCGTAGAGTTGAGGAAATGATTGCGTCGCCACGCAAAGGAGAGCATCACAACGACCACCGTCAAGCCGACGATCAGCa                                                     >  1:1629117/1‑99 (MQ=255)
                                                  gTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCATCAAGCCGACGATCAGCAAc                                                   <  2:564673/100‑1 (MQ=255)
                                                     aaGCCCAATAACCGAGAGCGTAGCTTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACgc                                                 <  1:973830/99‑2 (MQ=255)
                                                     aaGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGt                                                <  2:4402915/100‑1 (MQ=255)
                                                          cAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAg                                           >  1:2383847/1‑100 (MQ=255)
                                                           aaTAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGc                                             <  1:1410061/97‑1 (MQ=255)
                                                           aaTAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGt                                          <  2:1380611/100‑1 (MQ=255)
                                                           aaTAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGAGCAGCAACGGTAGCAGt                                          >  1:3564945/1‑100 (MQ=255)
                                                            aTAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTg                                         <  1:1153275/100‑1 (MQ=255)
                                                              aaCCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCg                                       <  1:894978/100‑1 (MQ=255)
                                                               aCCGAGAGCGTAGCGATGAGGAAATGATTGCGTCGCCACGCAATAGAGAGCATCACACCCACCAGCGTCAAGCCGACGATCAGCAACCGTAACAGTGCGa                                      >  1:602432/1‑100 (MQ=255)
                                                                ccGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGCGCATTACAACCAACACCGTCAAGCCGACGATCAGCAACGGTAGCAGTTCg                                       >  1:580885/1‑98 (MQ=255)
                                                                     agcgtagcgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGt                                <  2:2390684/100‑1 (MQ=255)
                                                                      gcgtagcgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGtt                               >  2:4054859/1‑100 (MQ=255)
                                                                       cgtagcgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGttt                              >  2:4076428/1‑100 (MQ=255)
                                                                        gtagcgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGtttt                             >  2:2384296/1‑100 (MQ=255)
                                                                            cgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTgg                         >  2:1317743/1‑100 (MQ=255)
                                                                            cgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTgg                         <  1:501925/100‑1 (MQ=255)
                                                                            cgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTgg                         <  1:501941/100‑1 (MQ=255)
                                                                              ttGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAg                       <  2:3010688/100‑1 (MQ=255)
                                                                              ttGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAg                       <  2:3924018/100‑1 (MQ=255)
                                                                                gAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGtt                     >  2:2446529/1‑100 (MQ=255)
                                                                                  ggAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTAt                   >  2:2569760/1‑100 (MQ=255)
                                                                                   ctctccaTTGCGTGGCGACGTAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGACCAGGGGTTGTGGAGTTagt                  >  1:2676701/7‑98 (MQ=255)
                                                                                    tctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTg                 >  2:1587877/6‑100 (MQ=255)
                                                                                    aaaTGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTg                 >  2:898041/1‑100 (MQ=255)
                                                                                     ctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGt                >  2:3354730/5‑100 (MQ=255)
                                                                                     ctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGt                >  2:1630537/5‑100 (MQ=255)
                                                                                     ctccaTTGCGTGGCGACACAATGGAGAGCATCAAAACCACCACCGTCAAACCGACGATCAGCAACGGTAGCAGAACGATCAGGTTTTGTGGAGCTATTg                 >  1:2469563/5‑99 (MQ=255)
                                                                                       ccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTc               >  1:322509/3‑99 (MQ=255)
                                                                                       ccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCa              >  1:3441480/3‑100 (MQ=255)
                                                                                       ccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCa              >  1:2838146/3‑100 (MQ=255)
                                                                                        gATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCAt             >  2:332381/1‑100 (MQ=255)
                                                                                        caTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGAACAGGTGTTGTGGAGTTATTGTCAt             >  1:2383218/2‑100 (MQ=255)
                                                                                           tGCGTCGCCACTCAATGGAGAGCATCACAACCACCTCCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGc          <  1:20060/100‑1 (MQ=255)
                                                                                             cGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGa        >  1:1131097/1‑100 (MQ=255)
                                                                                             cGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGa        >  1:2935602/1‑100 (MQ=255)
                                                                                              gTCGCCACGCAATGGAGAGCATCACAACCCCCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATgg           <  1:3598596/96‑1 (MQ=255)
                                                                                                 gCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTa    >  2:1713749/1‑100 (MQ=255)
                                                                                                 gCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTa    >  1:3665970/1‑100 (MQ=255)
                                                                                                 gCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTa    >  2:2435808/1‑100 (MQ=255)
                                                                                                 gCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTa    <  2:1248639/100‑1 (MQ=255)
                                                                                                   cACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTACg  <  2:3144773/100‑1 (MQ=255)
                                                                                                   cACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTACg  <  2:2002205/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
ACGTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTTACG  >  NC_000913/2391318‑2391516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: