| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,560,321 | C→T | 19.0% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,560,321 | 0 | C | T | 19.0% | 418.1 / 81.6 | 188 | A22V (GCT→GTT) | yffL | CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base C (65/87); new base T (14/22); total (79/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-02 | |||||||||||
Only 100 of 199 total aligned reads displayed.
TGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCGTCA > NC_000913/2560222‑2560420 | tGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgc > 2:2112794/1‑100 (MQ=255) gAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgctg < 1:2019984/100‑1 (MQ=255) aaTAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgctgc > 1:573495/1‑100 (MQ=255) aTAAATTATTCAATATCAAGAACTTAAATCCATTTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCa < 2:894430/100‑1 (MQ=255) aTAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCa > 2:692337/1‑100 (MQ=255) aTAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCa < 1:3602104/100‑1 (MQ=255) aTAAATTAATCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGAACCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCa < 1:1097640/100‑1 (MQ=255) aaaTTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAAc > 2:2030439/1‑100 (MQ=255) aaTTATTCAATATCAAGAACTTGAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACa < 2:2645846/100‑1 (MQ=255) aaTTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACa < 2:3829360/100‑1 (MQ=255) aaTTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACa > 1:2877187/1‑100 (MQ=255) aaTTATTCAATATAAAGAACTTAAATACATGTTTGCAACGAAAGATACAGAGTTCAAAAATAGGATAAAAACAAATAAAAGCGAGCGGAAtgcaaaaaca > 1:4026738/1‑93 (MQ=255) attattCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACa < 1:893461/99‑1 (MQ=255) ttCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCg > 2:2566827/1‑100 (MQ=255) atcttCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCgggg < 2:4110383/96‑1 (MQ=38) aaTATCAAGAACTTAAATTTATTTTTTCTACTAATGATCCTGCGTTGGCAAATAAGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCggg < 1:3900360/99‑1 (MQ=12) atatCAAGAACTTAAATCCATGTTTTCAACGAAAGATCCAGAGTTCGAAAATAGGATCACCACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCggggg < 1:2331877/100‑1 (MQ=37) atatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCggggg < 2:3242502/100‑1 (MQ=38) atatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCggggg < 2:1450202/100‑1 (MQ=38) atatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCggggg < 2:1046285/100‑1 (MQ=38) atatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCggggg < 2:2738834/100‑1 (MQ=38) atatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCggggg > 1:3995884/1‑100 (MQ=255) tatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCGGGGGc < 2:4305471/100‑1 (MQ=38) tatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCGGGGGc < 1:1314270/100‑1 (MQ=38) ctCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCg < 2:444231/99‑1 (MQ=255) atCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCGGGGGct < 2:750113/100‑2 (MQ=38) atCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCCGGGGGc < 1:4265533/99‑1 (MQ=38) atCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAG‑CCCCGGCATGTTGCAGCATTCCGGGGGctt < 2:1630198/100‑3 (MQ=37) tCAAGAACTTAAATCCATGTTTGCAACGCAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCgg > 1:2844282/1‑100 (MQ=255) tCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCgg < 2:4158322/100‑1 (MQ=255) tCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCgg > 1:2490302/1‑100 (MQ=255) tCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGCTAGAAAATAGGATCAACACAAGTAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCgg < 1:1052170/100‑1 (MQ=255) cAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCGCCGGAATGCTGCAACATGCCgggg > 1:3734700/1‑95 (MQ=255) aaGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTa > 2:2934018/1‑100 (MQ=255) gAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTAtn < 1:164624/100‑2 (MQ=255) gAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATg < 2:830915/100‑1 (MQ=255) aaCTTAAATCCCTGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAATAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATg < 1:3717810/99‑1 (MQ=255) aaCTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATga < 1:933251/100‑1 (MQ=255) aCTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATgag < 2:2825725/100‑1 (MQ=255) aCTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATga < 1:1842651/99‑1 (MQ=255) aTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACaa < 2:2391224/100‑1 (MQ=255) aTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACaa < 2:545150/100‑1 (MQ=255) aTCCAGGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACan < 2:1669962/100‑2 (MQ=255) tCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAg < 1:4054315/100‑1 (MQ=255) ccATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGc < 1:4333270/100‑1 (MQ=255) ccATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGc < 1:2699958/100‑1 (MQ=255) cATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCt > 1:3347186/1‑100 (MQ=255) gCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATTCCGGGGGCGGTATGAGAAACAAGCTAAAGgag < 2:4179326/100‑1 (MQ=255) gCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGgag > 2:3014572/1‑100 (MQ=255) gCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGgag < 1:752098/100‑1 (MQ=255) cAACGAACGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGgag > 1:2302400/1‑99 (MQ=255) cAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGgaga > 1:1431994/1‑100 (MQ=255) aaaaTCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTtct < 1:3068107/97‑1 (MQ=255) aaGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAGGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTtct < 1:873371/100‑1 (MQ=255) aGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTtctc < 2:3868355/100‑1 (MQ=255) aGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTtctc < 2:2525665/100‑1 (MQ=255) aGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTtctc < 2:2186050/100‑1 (MQ=255) cAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCTGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTc < 1:2074859/100‑1 (MQ=255) cAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTc > 2:374358/1‑100 (MQ=255) agagTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCt < 2:2959034/100‑1 (MQ=255) gagTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTg < 2:1113688/100‑1 (MQ=255) gagTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTg < 1:3014555/100‑1 (MQ=255) gTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGat > 1:3490651/1‑100 (MQ=255) gTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGat > 1:1243830/1‑100 (MQ=255) cGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACCAGCTAAAGGAGAATTTCTCATGTCTGATATg < 1:4102585/100‑1 (MQ=255) cGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGACCAACAAGCTAAAGGAGACTTTCTCATGTCTGCTATg > 1:4137623/1‑100 (MQ=255) aaaaTAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCt < 1:1579893/100‑1 (MQ=255) aaaaTAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCt > 2:1350272/1‑100 (MQ=255) aaTAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAg < 1:2944729/100‑1 (MQ=255) aTAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGc < 2:3697123/100‑1 (MQ=255) aTAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGc < 2:1829042/100‑1 (MQ=255) aGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAg < 1:1400481/100‑1 (MQ=255) ggATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGt > 2:2693160/1‑100 (MQ=255) gATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTa < 2:755703/100‑1 (MQ=255) gATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTa < 2:957005/100‑1 (MQ=255) gATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTa > 1:2152669/1‑100 (MQ=255) aTCAACACAAATAAAAGCCCCCTGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACCAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGt < 1:2511650/98‑1 (MQ=255) aTCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAg < 2:3376366/100‑1 (MQ=255) cAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAg < 1:448555/98‑1 (MQ=255) cacaAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACaa > 1:49950/1‑100 (MQ=255) caAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGa > 1:3862471/1‑100 (MQ=255) caAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGa > 2:2154617/1‑100 (MQ=255) aaTAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaa < 2:1793440/100‑1 (MQ=255) aaTAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaa > 1:4192684/1‑100 (MQ=255) aaaaGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaacaa > 2:3291488/1‑100 (MQ=255) ccgCCCCCGGCATGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGATAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaacaaa > 2:3285716/3‑99 (MQ=37) cgCCCCCGGCATGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAGTTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAaacaaaca > 1:2816525/2‑100 (MQ=37) cgCCCCCGGCATGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAaacaaaca > 2:1882011/2‑100 (MQ=38) cccccGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAat < 1:2417083/100‑1 (MQ=255) ccccGGCATGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatg > 2:3446544/1‑100 (MQ=38) ccccGGCATGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatg > 2:2439237/1‑100 (MQ=38) ccccGGCATGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATCTCTGACATGCTAGCAGTAGAACAAGAAACAAACAatg > 1:2960068/1‑100 (MQ=38) acccGGCATGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGCTAAAGAAGAATTTCTAATGTATGATATGCTAACAGTAGAACAAGAAacaaaaaa > 1:2659441/2‑98 (MQ=25) cccGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGCAGAACAAGAAACAAACAat > 2:3770125/1‑98 (MQ=255) ccGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatgat > 2:2863400/1‑100 (MQ=255) aTGTTGCAGCATTCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTTTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTc > 1:1868362/1‑99 (MQ=255) aTGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCg < 2:2714223/100‑1 (MQ=255) aTGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCg < 1:1706267/100‑1 (MQ=255) ctgcAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCGTCa > 2:3556824/1‑100 (MQ=255) ctgcAACATGCCGGGGGCGGAATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAAGGATGTTCGTCa > 1:98606/1‑100 (MQ=255) | TGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCCGGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCGTCA > NC_000913/2560222‑2560420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |