Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 756,960 A→G 16.0% T352A (ACC→GCC)  sdhA → succinate dehydrogenase, flavoprotein subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913756,9600AG16.0% 315.8 / 46.5 142T352A (ACC→GCC) sdhAsuccinate dehydrogenase, flavoprotein subunit
Reads supporting (aligned to +/- strand):  ref base A (49/69);  new base G (10/13);  total (60/82)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 143 total aligned reads displayed.

GTAAAGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTG  >  NC_000913/756862‑757059
                                                                                                  |                                                                                                   
gTAAAGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAAc                                                                                                    <  1:3031606/100‑1 (MQ=255)
gTAAAGAAGTTCTCGAATACCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTGCGGTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAAc                                                                                                    <  1:4183163/100‑1 (MQ=255)
 tAAAGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAAcc                                                                                                   <  1:1109929/100‑1 (MQ=255)
 tAAAGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAAcc                                                                                                   >  2:3564510/1‑100 (MQ=255)
 tAAAGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATCCCGGTTATCCCAAcc                                                                                                   >  2:1202242/1‑100 (MQ=255)
 tAAAGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCGTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAAcc                                                                                                   <  2:2099386/100‑1 (MQ=255)
  aaaGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCt                                                                                                  >  1:1181122/1‑100 (MQ=255)
     gaagTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTc                                                                                               <  1:2065526/100‑1 (MQ=255)
      aagTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCa                                                                                              <  1:2748667/100‑1 (MQ=255)
      aagTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCATACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCa                                                                                              <  2:2109037/100‑1 (MQ=255)
       agTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTAACTTCGCTCACGTCGATCCGGTGACAGAGCCGATTCCGGTTATCCCAACCTGTCAc                                                                                             >  2:571229/1‑100 (MQ=255)
        gTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACt                                                                                            <  2:181215/100‑1 (MQ=255)
         ttCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTa                                                                                           >  2:1937695/1‑100 (MQ=255)
          tctcGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGCTTCCGGTTATCCCAACCGGTCACTa                                                                                           >  1:2503229/1‑99 (MQ=255)
          tctcGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTAc                                                                                          >  1:652191/1‑100 (MQ=255)
          tctcGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTAc                                                                                          >  2:2759581/1‑100 (MQ=255)
           ctcGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACa                                                                                         <  2:1122743/100‑1 (MQ=255)
            tcGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACat                                                                                        <  1:2512341/100‑1 (MQ=255)
            tcGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACat                                                                                        >  1:669807/1‑100 (MQ=255)
            tcGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACat                                                                                        <  1:3408049/100‑1 (MQ=255)
             cGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACatg                                                                                       >  1:1963260/1‑100 (MQ=255)
              gAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACatga                                                                                      >  1:86883/1‑100 (MQ=255)
                aTCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACatgatg                                                                                    >  2:3007859/1‑100 (MQ=255)
                 tCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATgg                                                                                   <  2:2592174/100‑1 (MQ=255)
                  cccGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATggg                                                                                  <  2:4282436/100‑1 (MQ=255)
                   ccGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGc                                                                                 <  1:1104252/100‑1 (MQ=255)
                     gTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCgg                                                                               <  1:1801905/100‑1 (MQ=255)
                     gTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCgg                                                                               >  1:1594102/1‑100 (MQ=255)
                      tCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGt                                                                              <  2:2039194/100‑1 (MQ=255)
                       cTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTa                                                                             >  2:469567/1‑100 (MQ=255)
                          ccGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTc                                                                          <  1:3204503/100‑1 (MQ=255)
                          ccGGGTATCCTGGAGCTTTCCCGTACCTTCGCGCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTc                                                                          <  2:1867315/100‑1 (MQ=255)
                           cGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTcc                                                                         <  2:3011529/100‑1 (MQ=255)
                            gggTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCg                                                                        <  2:1953649/100‑1 (MQ=255)
                              gTATCCTGAGGTTATCCCATACCTTCGGGCACGTCGATCCGGGGCAAGAGCCGATTCCGGTTATCCCCACCTGTCACTACGTGATGGGCGGTATTCCGAc                                                                      <  1:3792729/100‑1 (MQ=255)
                               tATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGAcc                                                                     <  2:652193/100‑1 (MQ=255)
                                 tCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCaa                                                                   <  2:27283/100‑1 (MQ=255)
                                   cTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAg                                                                 >  2:3085228/1‑100 (MQ=255)
                                   cTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAg                                                                 <  1:4357963/100‑1 (MQ=255)
                                   cTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAg                                                                 >  1:2991231/1‑100 (MQ=255)
                                   cTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAg                                                                 >  1:769153/1‑100 (MQ=255)
                                        ggtttCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTAcc                                                            >  2:4072323/3‑100 (MQ=255)
                                        gCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTAcc                                                            >  2:2024489/1‑100 (MQ=255)
                                         cTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGTCGGAATACCGCCCatcatgtagt                                                           <  1:3514538/100‑10 (MQ=37)
                                           ttCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGt                                                         <  1:941884/100‑1 (MQ=255)
                                            tCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTc                                                        >  2:807019/1‑100 (MQ=255)
                                               cGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAgg                                                     <  2:258166/100‑1 (MQ=255)
                                               cGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAgg                                                     <  2:2590309/100‑1 (MQ=255)
                                               cGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAgg                                                     >  2:529908/1‑100 (MQ=255)
                                                gTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACTTGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGc                                                    <  1:2345328/100‑1 (MQ=255)
                                                 tACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCa                                                   >  1:446907/1‑100 (MQ=255)
                                                  aCCTTCGCTCACTTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCac                                                  <  2:4297860/100‑1 (MQ=255)
                                                   ccTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCact                                                 >  2:418295/1‑100 (MQ=255)
                                                    cTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCactg                                                >  2:4318320/1‑100 (MQ=255)
                                                      tCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCactgac                                              >  2:679051/1‑100 (MQ=255)
                                                       cGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCactgact                                             <  2:2452256/100‑1 (MQ=255)
                                                         cTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACtgt                                           >  2:1021664/1‑100 (MQ=255)
                                                          tCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACtgtg                                          <  1:1375069/100‑1 (MQ=255)
                                                           cACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGa                                         <  2:13206/100‑1 (MQ=255)
                                                           cACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGa                                         >  2:1075523/1‑100 (MQ=255)
                                                           cACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGa                                         <  2:934092/100‑1 (MQ=255)
                                                             cGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAAt                                       >  2:1439345/1‑100 (MQ=255)
                                                             cGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAAt                                       >  2:2088556/1‑100 (MQ=255)
                                                              gTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATg                                      >  1:3538599/1‑100 (MQ=255)
                                                              gTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATg                                      <  2:2439246/100‑1 (MQ=255)
                                                              gTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATg                                      <  2:1255002/100‑1 (MQ=255)
                                                                cGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTAAATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATgag                                    <  1:1463432/100‑1 (MQ=255)
                                                                 gATCCGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATgaga                                   <  1:1872727/100‑1 (MQ=255)
                                                                   tCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGaaa                                 <  1:3912357/100‑1 (MQ=255)
                                                                    ccGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAg                                <  1:395286/100‑1 (MQ=255)
                                                                     cGGTGAAAGAGCCGATTCCGGTTATCCCGGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAgg                               <  2:2345937/100‑1 (MQ=255)
                                                                     cGGTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAgg                               >  1:4109360/1‑100 (MQ=255)
                                                                     cGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAgg                               <  1:2781792/100‑1 (MQ=255)
                                                                      ggTGAAAGAGCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAACGTTACCGGTCAGGCACTGACTGTGAATGAGAAAgg                               >  1:4259477/1‑99 (MQ=255)
                                                                        tGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGa                            <  2:2913213/100‑1 (MQ=255)
                                                                         gAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGaa                           <  1:955073/100‑1 (MQ=255)
                                                                         gAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGaa                           >  2:3653623/1‑100 (MQ=255)
                                                                          acagagCCGATTCCGGTTATCCCAACCTGTCACGACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGGGAATGAGAAAGGCGaa                           <  1:2614844/97‑1 (MQ=255)
                                                                           aaGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGa                         <  2:77746/100‑1 (MQ=255)
                                                                            agagCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGAt                        >  1:2551285/1‑100 (MQ=255)
                                                                            agagCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGAt                        >  2:3423829/1‑100 (MQ=255)
                                                                             gggCCGATTCCGGATATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGAtg                       >  2:2988106/3‑100 (MQ=255)
                                                                               gCCGATTCCGGTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGAtgtg                     >  2:4123507/1‑100 (MQ=255)
                                                                                ccGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTgg                    <  1:2274804/100‑1 (MQ=255)
                                                                                ccGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTgg                    <  1:2086292/100‑1 (MQ=255)
                                                                                   aTTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGgttg                 <  1:1255063/100‑1 (MQ=255)
                                                                                      ccGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTc              >  2:3341788/1‑100 (MQ=255)
                                                                                       cGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTcc             >  1:934604/1‑100 (MQ=255)
                                                                                        ggTTATCCCAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCg            >  1:2883800/1‑100 (MQ=255)
                                                                                        ggTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCg            >  2:1227161/1‑100 (MQ=255)
                                                                                         gTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCgg           <  2:1281144/100‑1 (MQ=255)
                                                                                          ttATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCggg          <  1:4198779/100‑1 (MQ=255)
                                                                                           tATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGa         <  2:989145/100‑1 (MQ=255)
                                                                                             tCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACt       >  2:532521/1‑100 (MQ=255)
                                                                                              cccAGCCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTg      <  2:1651419/100‑1 (MQ=255)
                                                                                              cccAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGAc        <  1:2587468/98‑1 (MQ=255)
                                                                                              cccAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTg      >  1:4139899/1‑100 (MQ=255)
                                                                                               ccAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGagatc     >  1:999594/1‑96 (MQ=255)
                                                                                               ccAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGt     >  2:1439492/1‑100 (MQ=255)
                                                                                                cAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGtt    <  2:2254431/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
GTAAAGAAGTTCTCGAATCCCGTCTGCCGGGTATCCTGGAGCTTTCCCGTACCTTCGCTCACGTCGATCCGGTGAAAGAGCCGATTCCGGTTATCCCAACCTGTCACTACATGATGGGCGGTATTCCGACCAAAGTTACCGGTCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTG  >  NC_000913/756862‑757059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: