Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,344,033 A→G 15.8% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,344,0330AG15.8% 374.9 / 56.5 160L105P (CTG→CCG) yciTglobal regulator of transcription; DeoR family
Reads supporting (aligned to +/- strand):  ref base A (79/55);  new base G (14/11);  total (93/67)
Fisher's exact test for biased strand distribution p-value = 8.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

Only 100 of 166 total aligned reads displayed.

CGCCACCGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCA  >  NC_000913/1343935‑1344132
                                                                                                  |                                                                                                   
cGCCACCGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCag                                                                                                    >  2:1834861/1‑100 (MQ=255)
cGCCACCGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCag                                                                                                    <  2:437742/100‑1 (MQ=255)
cGCCACCGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCag                                                                                                    <  1:1649276/100‑1 (MQ=255)
   cACCGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGt                                                                                                 >  2:3569137/1‑100 (MQ=255)
     ccGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTcc                                                                                               <  1:128286/100‑1 (MQ=255)
      cGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCg                                                                                              <  2:52307/100‑1 (MQ=255)
      cGAGCAAAATAACTTCACAAAGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTcc                                                                                               >  1:18071/1‑99 (MQ=255)
       gAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCgg                                                                                             >  2:922346/1‑100 (MQ=255)
       gAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCgg                                                                                             <  1:2843845/100‑1 (MQ=255)
          cAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCg                                                                                          >  2:1269617/1‑100 (MQ=255)
           aaaaTAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGAGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGa                                                                                         >  2:2169180/1‑100 (MQ=255)
             aaTAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCGGACTCTGGGCGAgc                                                                                       <  2:2785258/100‑2 (MQ=255)
               tAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCGGACTCTGGGCGAGCAg                                                                                     <  1:2859718/100‑1 (MQ=255)
               tAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTACTCGCCCGGACTCTGGGCGAGCAg                                                                                     <  2:3040714/100‑1 (MQ=38)
                aaCTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCGGACTCTGGGCGAGCAga                                                                                    <  2:3449912/100‑2 (MQ=255)
                 aCTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAggg                                                                                   <  1:223914/100‑1 (MQ=255)
                  cTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGc                                                                                  <  2:3619411/100‑1 (MQ=255)
                    tCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATCATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGCGTAGGGCAt                                                                                >  1:1936394/1‑100 (MQ=255)
                     cacaAGGCGCGTCTTTCAGCAACTGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCAtt                                                                               >  1:2560048/1‑100 (MQ=255)
                     cacaAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCAtt                                                                               >  1:384048/1‑100 (MQ=255)
                     cacaAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCAt                                                                                >  1:1728627/1‑99 (MQ=255)
                       caAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATtgc                                                                             <  2:764338/100‑1 (MQ=255)
                          ggCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATtgctgc                                                                          >  1:1058132/1‑100 (MQ=255)
                          ggCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATtgctgc                                                                          <  1:2609915/100‑1 (MQ=255)
                            cgcgTCTTTCAGCAAATTCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGTGCATtgctgctg                                                                        >  1:2856450/1‑100 (MQ=255)
                                tCTTTCAGCAAATGTTTGATGTAGCTGCTGACCGTGATGATAGTGAAATTTTTCTTCTTCTCTCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGcc                                                                      <  1:973819/98‑1 (MQ=255)
                                   ttCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGTCCTTGCTGCTGCCAtttt                                                                 >  1:2620512/1‑100 (MQ=255)
                                   ttCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCAtttt                                                                 >  1:1433552/1‑100 (MQ=255)
                                   ttCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCAtttt                                                                 >  1:2227636/1‑100 (MQ=255)
                                    tCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCTGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTc                                                                <  1:2346692/100‑1 (MQ=255)
                                    tCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTc                                                                <  1:274963/100‑1 (MQ=255)
                                    tCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTc                                                                <  2:1326464/100‑1 (MQ=255)
                                      ngCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGa                                                              >  1:1381844/2‑100 (MQ=255)
                                      aGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGa                                                              >  1:1031343/1‑100 (MQ=255)
                                       gCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGAt                                                             <  2:360504/100‑1 (MQ=255)
                                       gCAAATGCGCGAGGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGAt                                                             <  2:284541/100‑1 (MQ=255)
                                            tGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGa                                                        <  2:679817/100‑1 (MQ=255)
                                               gcgATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATgg                                                     <  1:1914632/100‑1 (MQ=255)
                                               gcgATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATgg                                                     <  1:3965875/100‑1 (MQ=255)
                                                 gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGtt                                                   <  2:1049621/100‑1 (MQ=255)
                                                   tGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCGCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTc                                                 <  1:764730/100‑1 (MQ=255)
                                                      aGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGcc                                              >  2:779716/1‑100 (MQ=255)
                                                       gctgctGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCACAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGccc                                             >  2:117873/1‑100 (MQ=255)
                                                        ctgctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCg                                            <  2:2613611/100‑1 (MQ=255)
                                                          gctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTcagatcgg                                          >  1:353043/1‑93 (MQ=255)
                                                          gctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGAGAGAAGGGCATTGCTGCTGCCATTTTCGATCAAGATGGTTTCGCCCGGt                                          >  1:1389953/1‑100 (MQ=255)
                                                           ctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGtt                                         <  1:776342/100‑1 (MQ=255)
                                                           ctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGtt                                         <  2:4041892/100‑1 (MQ=255)
                                                           ctgACCGTGATGATAGTGACATTTTTCTTCGGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGtt                                         <  1:3025765/100‑1 (MQ=255)
                                                            tgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTg                                        >  2:1413250/1‑100 (MQ=255)
                                                             gACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTg                                        >  1:2579453/1‑99 (MQ=255)
                                                               ccGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAAc                                     >  2:3244977/1‑100 (MQ=255)
                                                               ccGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGCGTGaa                                      >  1:3653480/1‑99 (MQ=255)
                                                                cGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGTCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAAcc                                    <  1:2819230/100‑1 (MQ=255)
                                                                cGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAAcc                                    >  1:37005/1‑100 (MQ=255)
                                                                cGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCGGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAAcc                                    <  1:3990894/100‑1 (MQ=255)
                                                                    atgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCg                                <  2:597457/100‑1 (MQ=255)
                                                                     tgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGa                               >  2:1589724/1‑100 (MQ=255)
                                                                     tgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGa                               >  2:1622268/1‑100 (MQ=255)
                                                                     tgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGa                               >  1:441563/1‑100 (MQ=255)
                                                                     tgatAGTAACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGa                               >  2:2302768/1‑100 (MQ=255)
                                                                      gatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAc                              >  2:2362551/1‑100 (MQ=255)
                                                                       atAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAcg                             >  2:4184825/1‑100 (MQ=255)
                                                                       atAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAcg                             >  2:1753595/1‑100 (MQ=255)
                                                                        tAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAcgc                            <  1:3439819/100‑1 (MQ=255)
                                                                           tGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGc                         <  2:3809768/100‑1 (MQ=255)
                                                                            gACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTGGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCa                        >  1:1426779/1‑100 (MQ=255)
                                                                            gACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCa                        <  1:3060960/100‑1 (MQ=255)
                                                                               aTTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAAc                     <  2:3193407/100‑1 (MQ=255)
                                                                                   ttcttcTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCgg                 <  2:3656994/100‑1 (MQ=255)
                                                                                    ttccctacTCGCCCGGACTCTGGACGAGTAGGGCGTTGCTGCTGCCATTTTCGCAAAAGATGGTGCCGCCCGGTTGAACCAGCGCCGCGGCAAACTc                   >  1:4164589/8‑97 (MQ=255)
                                                                                    tcttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGc                <  2:3778874/100‑1 (MQ=255)
                                                                                     cttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCg               <  2:3544540/100‑1 (MQ=255)
                                                                                     cttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCg               <  2:2112711/100‑1 (MQ=255)
                                                                                      ccctacTCGCCCGGACTCTGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGa              >  2:2435746/6‑100 (MQ=38)
                                                                                      ccctacTCGCCCGGACTCTGGGCGAGCAGGGCATTGCTGCTGCCATTTTCGATAAAGATAGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGa              >  2:3625463/6‑100 (MQ=37)
                                                                                      ccctacTCGCACGGACTCTGGCCGAGCAGGGCATTGCTGCTGCCATATTCGATACAGCTGGTTTCGCCCGGCTGAACCAGCGACCCGGCAAAcgcg                  >  1:3579425/6‑96 (MQ=255)
                                                                                       tctGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAg             <  1:4124153/100‑1 (MQ=255)
                                                                                       tctGCTCGCCCAGAGTCCGGGCGAGTAGGGCATCTCTTCTGCCACTTTCGATAAAGATGGTTTCACCCGGTTGAACCAGCGACGCGCCACACTCGGCg               >  1:353689/1‑98 (MQ=255)
                                                                                       cctacTCGCCCGGACTCTGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAg             >  2:4166124/5‑100 (MQ=255)
                                                                                       cctacTCGCCCGGACTCTGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAg             >  1:985370/5‑100 (MQ=255)
                                                                                       cctacTCGCCCGGACTCTGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAg             >  2:1022195/5‑100 (MQ=255)
                                                                                       cctacTCGCCCGGACTCTGGGCGAGCAGGGCATTGCTGCTGCCATTATCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCgg                 >  1:887927/5‑96 (MQ=37)
                                                                                        ctacTCGCCCGGACTCTGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGt            >  2:2814405/4‑100 (MQ=255)
                                                                                         tacTCGCCCGGACTCTGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGATGAACCAGCGACGCGGCAAACTCGGCGAg             >  1:3884442/3‑98 (MQ=255)
                                                                                          gCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTc          >  1:2138541/1‑100 (MQ=255)
                                                                                          gCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTc          >  2:1919471/1‑100 (MQ=255)
                                                                                           cTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCa         >  1:3204822/1‑100 (MQ=255)
                                                                                           cTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCa         >  1:3102554/1‑100 (MQ=255)
                                                                                             cGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACg       >  2:203833/1‑100 (MQ=255)
                                                                                             cGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTCGAACCAGCGACGCGGCAAACTCGGCGAGTTCACg       >  1:2319058/1‑100 (MQ=255)
                                                                                              gCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGc      >  1:3299187/1‑100 (MQ=255)
                                                                                              gCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGc      >  2:2241924/1‑100 (MQ=255)
                                                                                              gCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGc      <  2:2641970/100‑1 (MQ=255)
                                                                                              gCCCAGAGTCCGGGAGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTGGCCCGGTTGAACCAGCGACGCGGCAACCTCGGCGAGGTCACGc      >  1:524490/1‑100 (MQ=255)
                                                                                               cccAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCt     >  1:1428581/1‑100 (MQ=255)
                                                                                               cccAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCt     >  1:2745309/1‑100 (MQ=255)
                                                                                               cccAGAGTCCGGGCGAGTAGGGCATTGATGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGc      >  1:2109492/1‑99 (MQ=255)
                                                                                                 cAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTc   >  1:3784490/1‑100 (MQ=255)
                                                                                                  agagTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCa  >  1:533406/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
CGCCACCGAGCAAAATAACTTCACAAGGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCA  >  NC_000913/1343935‑1344132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑