Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,781,152 | 0 | A | G | 29.6% | 109.7 / 24.3 | 72 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
Reads supporting (aligned to +/- strand): ref base A (33/17); new base G (0/21); total (33/39) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.30e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGC > NC_000913/3781053‑3781251 | gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑Ga > 2:1515169/1‑100 (MQ=255) gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑Ga > 2:2196540/1‑100 (MQ=255) gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAgg < 1:2258625/100‑1 (MQ=255) gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAgg < 1:2333596/100‑1 (MQ=255) gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAgg > 2:810367/1‑100 (MQ=255) agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAggg < 1:1186674/100‑1 (MQ=255) ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAggggca > 2:1111631/1‑98 (MQ=255) ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGaa < 1:1515168/100‑1 (MQ=255) gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAg < 2:100690/100‑1 (MQ=255) gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAg > 2:1435080/1‑100 (MQ=255) aCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAgg < 1:1215585/100‑1 (MQ=255) aCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAgg < 2:1968821/100‑1 (MQ=255) ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAgg < 1:1381751/99‑1 (MQ=255) tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTTTTTTCTCCTCAGAGGAGAGGGA‑A‑GGG‑TT‑GAGAGGAAAAGGCCGCACTGCTCa > 2:293572/1‑100 (MQ=255) tttgtcCTCCCTCACTCGAAAAGGCCCCCGCTCT‑TTTTTTTCCCCCCCGCCCC‑CCGGGGGGGGGGCGC‑GGG‑GG‑GGGGGGAAAAGGCCGCACTGCTCACCa < 1:1906583/98‑1 (MQ=255) tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GG‑GAGGGGAAAAGGCCGCACTGCTCAcc > 1:2177415/1‑100 (MQ=255) tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCaa > 1:43313/1‑100 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 2:19582/1‑100 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GG‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:1991004/1‑100 (MQ=255) cccTCACACTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GA‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 2:1267670/1‑100 (MQ=255) ccgcgctcgGAACCGAGACCGCAGTTTTTTTTCCGCCCCCCCCCCCCCGGGGAGAGGCC‑C‑GGG‑GA‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg < 2:573724/95‑1 (MQ=255) ctctctctAAAACCCCCCCGCCCTTTTTTTTCCCCCCCCCCCCCTCGGGGGGGGGGGC‑G‑GGG‑GT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCtcc < 1:1620631/100‑3 (MQ=255) cTCCCTCTGAAACGACCCCGCCCTCTTTTTTTCTCCCCCCCCCCCCGGGGGGGGGGGC‑G‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc < 2:382283/100‑1 (MQ=255) cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc > 1:959202/1‑100 (MQ=255) ttttGAAACTACCCCGCCCTCTTTTTTCCCCCCCCCCCCCCCCGGGGAGAGGCC‑C‑GGG‑TT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc < 2:105880/97‑1 (MQ=255) ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc > 1:1791186/1‑100 (MQ=255) ctGAAACGCCCCCCCACTTTTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGGC‑C‑GGG‑GG‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt < 1:2356623/97‑1 (MQ=255) tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATcaga > 1:105881/1‑97 (MQ=255) tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg > 2:1190479/1‑100 (MQ=255) tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg > 1:1847227/1‑100 (MQ=255) gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:1183087/1‑100 (MQ=255) gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:549931/1‑100 (MQ=255) aaaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc > 1:2200888/1‑100 (MQ=255) cGACCCCGCCCT‑TTTTTTTCCCCCCCCCCCCCCCGGGGGGGGGGC‑CGGGG‑GT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc < 1:810367/99‑1 (MQ=255) cGACCCCGCACTCTTTTTTCCTCCCGCGCCCCTCCGGGGGGAGGGC‑G‑GGG‑GT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg < 2:1902842/95‑1 (MQ=255) cGACACCGCACTCGTTTTTTCTCCCTCGCCCCTCCGGGCAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc > 2:1482060/1‑100 (MQ=255) acacCGCACTCTTTTTTTCTGCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg > 2:1464831/1‑99 (MQ=255) acacCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGAAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc > 1:1688418/1‑100 (MQ=255) ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt > 1:598378/1‑100 (MQ=255) ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt > 2:2131145/1‑100 (MQ=255) ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt > 1:2286430/1‑100 (MQ=255) cGCCCTCTTTTTTCCCCCCCCGCCCCCCCGGGGAGAGGGC‑G‑GGG‑GT‑GGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa < 2:2200886/100‑1 (MQ=255) ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg > 1:1516781/1‑100 (MQ=255) tctTTTTTTCTCCCGCGCCCCGCGGGGGAGAGGCC‑T‑GGG‑GG‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg < 1:1165616/99‑1 (MQ=255) ctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg > 1:1743874/1‑100 (MQ=255) tttttttCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑TAGGGGAAAAGGCCGCACTCCTCACCAATTTTTTGCTATCCTGCCCCCGCACTAAgggg > 2:665755/1‑98 (MQ=255) ttttttcCCCCCCCGCCTC‑CCGGGGGGGGGGC‑CGGGG‑GT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg < 2:1847227/98‑1 (MQ=255) ttttttcCCCCCCCGCCCCGCGGGGGAG‑GGGC‑C‑GGG‑GTGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg < 1:1346437/99‑1 (MQ=255) ttttttCCCCCGCGCCCCGCGGGGGAG‑GCGC‑C‑GGGCGT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg < 2:1688419/96‑1 (MQ=255) cccTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa > 1:2006005/1‑100 (MQ=255) cccTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa > 2:683389/1‑100 (MQ=255) cccGCGCCCCTCGGGGGAGGGGGC‑G‑GGT‑GT‑GGGGGTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa < 1:1111628/100‑1 (MQ=255) cctccgccccccGGGGGGGGGGC‑CGGGG‑GT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc < 1:1190477/92‑1 (MQ=255) ccTCGCCCCGCCGGGGAGAGGGC‑G‑GGG‑GT‑GTGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa < 1:300276/100‑1 (MQ=255) cTCGCCCCTCCGAGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa > 1:1573029/1‑100 (MQ=255) ttccgatctggggAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACa < 1:722364/91‑1 (MQ=255) cGCCCCTCGGGGGGGGGGGC‑G‑GGG‑GG‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc < 1:1267669/99‑1 (MQ=255) ccccTCCGGGGAGGGGAC‑C‑GGG‑GT‑AAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg < 2:20958/91‑1 (MQ=255) ccccccGGGGGGGGGGC‑G‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg < 1:1518029/100‑1 (MQ=255) ccccgggggAGAGGGC‑C‑GGG‑GT‑GAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt < 2:1519178/95‑1 (MQ=255) ccaccGGGGGGGGGCC‑G‑GGG‑GT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt < 1:19582/97‑1 (MQ=255) cccgggggAGGGGGC‑G‑GGG‑GT‑GGGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt < 1:1402692/95‑1 (MQ=255) ggggAGGGGGC‑G‑GGG‑GG‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt < 1:1212725/99‑1 (MQ=255) ggggAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACaagatcggaa > 2:722365/1‑91 (MQ=255) ggggAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt > 1:579483/1‑100 (MQ=255) gggggggggC‑G‑GGG‑GT‑GGGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa < 1:622209/94‑1 (MQ=255) ggggGAGGGC‑C‑GGG‑GG‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt < 2:2177413/94‑1 (MQ=255) gggggggC‑G‑GGG‑GG‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg < 1:1482059/96‑1 (MQ=255) gggC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa < 2:92276/98‑1 (MQ=255) ggC‑G‑GGG‑GT‑GGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc < 2:959204/98‑1 (MQ=255) gC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg < 2:2377604/100‑1 (MQ=255) gC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg > 2:633620/1‑100 (MQ=255) gg‑gT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt < 2:1417514/100‑1 (MQ=255) gAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg > 1:1187315/1‑100 (MQ=255) aGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGc > 2:2390652/1‑100 (MQ=255) | GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC‑C‑GGG‑GT‑GAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGC > NC_000913/3781053‑3781251 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |