| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.6% | 335.3 / 109.9 | 172 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (64/65); new base T (24/18); total (89/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.61e-01 | |||||||||||
Only 100 of 173 total aligned reads displayed.
TAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCC > NC_000913/4295963‑4296158 | tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGc < 2:1674650/100‑1 (MQ=33)tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGc > 1:1674649/1‑100 (MQ=33)tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGc < 2:1671800/100‑1 (MQ=33) aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCt > 1:821327/1‑100 (MQ=32) cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCTGCATC‑CGACATCAACGCCTg > 2:1560830/1‑100 (MQ=18) cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTg < 1:366271/100‑1 (MQ=32) ccgatCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTg < 2:2124350/96‑1 (MQ=18) ccgatCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTg < 2:1426685/96‑1 (MQ=18) cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGAt > 1:2001334/1‑100 (MQ=18) cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGAt < 2:1361414/100‑1 (MQ=33) gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGAt > 2:1242642/1‑99 (MQ=17) tcctATCTGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGc < 2:323800/97‑1 (MQ=255) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGc > 2:2246854/1‑100 (MQ=18) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGc < 1:26966/100‑1 (MQ=33) cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCg > 2:1974994/1‑100 (MQ=33) tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGAc < 1:1974995/100‑1 (MQ=33) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGGTAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACg > 1:2335045/1‑100 (MQ=255) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACg > 2:503155/1‑100 (MQ=32) cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCt < 1:2341729/100‑1 (MQ=18) cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCt > 1:184031/1‑100 (MQ=17) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTg < 1:2049363/100‑1 (MQ=25) ggCCTACGCCAGACAGCGCAATAGCCAGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTg > 1:1457697/1‑100 (MQ=25) gCCTACGCCAGTCAGCGCAATAGCCTCATTTAGCGTGATTTTGTAGCTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCt < 1:1432850/97‑1 (MQ=11) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGc > 1:106275/1‑100 (MQ=25) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGc > 1:2157542/1‑100 (MQ=25) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCcg < 2:942381/100‑1 (MQ=38) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCcg < 1:1047474/100‑1 (MQ=38) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTACcg > 1:1138215/1‑100 (MQ=17) aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCcgcg < 2:181406/100‑1 (MQ=40) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCcgcg < 2:748507/98‑1 (MQ=25) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTc > 2:104646/1‑100 (MQ=25) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTc > 1:1959908/1‑100 (MQ=255) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTc < 1:2320939/100‑1 (MQ=255) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCTGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCt < 1:1560829/100‑1 (MQ=255) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 2:2367272/1‑100 (MQ=25) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 2:484326/1‑100 (MQ=25) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:2266877/1‑100 (MQ=40) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCt < 1:2029507/100‑1 (MQ=255) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCt < 1:1984875/100‑1 (MQ=255) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 2:314185/99‑1 (MQ=25) aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATc < 2:4397/100‑1 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:1030410/100‑1 (MQ=255) gcgcAATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:200294/97‑1 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATGAACGCCTGATGGGACGTTTGCCGCGTcgcctca > 2:1073344/1‑92 (MQ=14) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:424607/100‑1 (MQ=25) gcAATATCCTGATTTAGCGTGATTTTGTAGATCGGATAAGGCGTTTACTCCGCATC‑CCACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcg < 2:2140109/100‑2 (MQ=14) gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 2:2370273/100‑1 (MQ=25) gcAATAGCCTGATTTAGAGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:1026917/1‑100 (MQ=255) gcAATAGCCGCATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTGACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 1:217173/100‑1 (MQ=255) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:2039685/100‑1 (MQ=40) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt > 1:112362/1‑100 (MQ=255) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt > 1:165366/1‑100 (MQ=255) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt > 1:2099525/1‑100 (MQ=255) tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatc > 1:1282258/1‑98 (MQ=16) aGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc < 1:993159/100‑1 (MQ=255) aGCCTGATTTAGCGTGATTTTGTAGCTCGGATAGGGGGTTTTCGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatct < 2:1771354/100‑4 (MQ=11) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt > 2:968518/1‑96 (MQ=9) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctta > 2:1707099/1‑95 (MQ=2) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGAcc > 2:200293/1‑93 (MQ=255) cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 2:2183845/99‑1 (MQ=255) aGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc < 1:683986/100‑1 (MQ=255) aGCGTGATACTGTATTTCGGTTAACGCCGTTATGCCG‑ATCTCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc < 2:1148749/100‑1 (MQ=2) gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc < 2:1725599/99‑1 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCCCAGAc > 2:982235/1‑92 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt < 2:1026919/100‑1 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt > 1:1232260/1‑100 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa > 2:2093664/1‑100 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa > 2:273255/1‑100 (MQ=255) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAg < 1:212834/100‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc > 2:1981439/1‑100 (MQ=40) ttttGTAGGTCGGATAAGGCGTTTACGCCACATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGcc < 2:2083110/100‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCGGACAGCGCAATAGCCTGATTTa > 2:833532/1‑100 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa > 1:1389131/1‑100 (MQ=255) gTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGGCt > 2:321543/1‑93 (MQ=255) gTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAg > 1:1601794/1‑100 (MQ=255) cGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg < 1:295197/100‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGt > 2:857856/1‑100 (MQ=40) ggCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt > 1:1912393/1‑99 (MQ=40) ggCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:95516/1‑100 (MQ=18) gTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa < 1:858489/100‑1 (MQ=255) ttACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa < 2:1461465/98‑1 (MQ=255) cgccgcATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg > 1:60146/1‑100 (MQ=40) gccgcATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCATTAGTCTTATTAAGCGTGATTTTGTAGGTCgg > 2:563406/1‑100 (MQ=11) gccgcATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCgg < 1:574118/100‑1 (MQ=38) gccgcATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCgg < 1:994092/100‑1 (MQ=38) cgcATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt < 1:1059985/100‑1 (MQ=38) cATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATaa > 2:1230726/1‑100 (MQ=38) tC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAgg < 1:77365/100‑1 (MQ=35) tC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg < 2:1896662/99‑1 (MQ=35) tC‑CGACATCAACGCCTGATGCGACACTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAgg < 1:871280/100‑1 (MQ=25) c‑cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGc < 1:108819/100‑1 (MQ=35) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg > 2:2283085/1‑100 (MQ=38) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATaa < 2:997039/95‑1 (MQ=35) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt < 1:2116358/100‑1 (MQ=38) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt > 2:2049361/1‑100 (MQ=35) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTacg > 2:1651901/1‑98 (MQ=18) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTacg > 2:2228473/1‑98 (MQ=18) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg > 2:891465/1‑100 (MQ=33) aCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 2:960737/100‑1 (MQ=31) aCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc > 2:1090530/1‑99 (MQ=31) | TAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCC > NC_000913/4295963‑4296158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |