New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1269275NA (NA)29 (0.210) 13/162 NT 21.7% coding (1/108 nt) ldrA toxic polypeptide, small
?NC_000913 = 1269313 115 (0.770)intergenic (‑38/+390) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small

GTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATatagccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269177‑1269275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATT  <  NC_000913/1269313‑1269207
                                                                                                                                                                                                              
GTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATA                                                                                                            <  2:2340962/100‑1
  TACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATA                                                                                                          <  1:3550562/100‑1
  TACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATA                                                                                                          >  1:1971049/1‑100
   ACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAG                                                                                                         >  1:590168/1‑100
   ACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAG                                                                                                         >  2:3568736/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  1:1151644/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  2:2289374/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  2:1483585/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  2:3321180/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  1:293273/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  1:2575181/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  2:3321235/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  1:2025251/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGCCATATAGC                                                                                                        >  2:1841465/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCACAAAATCATGGCAAACTGCGCGAGCGTCATATAG                                                                                                         >  2:2210237/1‑99
     GCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAACATCATGGCAAACTGCGCGAGCGTCATATAGCC                                                                                                       >  2:3525841/1‑100
     GCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGTGTCATATAGCC                                                                                                       >  1:2873406/1‑100
     GCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCC                                                                                                       >  2:1312874/1‑100
      CCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCG                                                                                                      >  2:3448203/1‑100
      CCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCG                                                                                                      >  1:3875518/1‑100
      CCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCC                                                                                                       >  2:2018538/1‑99
      CCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTAGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCG                                                                                                      >  2:2852352/1‑100
       CACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGC                                                                                                     >  2:1266234/1‑100
       CACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGC                                                                                                     <  1:1248553/100‑1
                                TAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTATTGTGTCATTACAACATGGCG                                                                            >  1:3208853/1‑100
                                  ATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGC                                                                          <  1:1960661/100‑1
                                  ATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGC                                                                          <  2:3450878/100‑1
                                  ATTCCCGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGC                                                                          >  1:1929089/1‑100
                                   TTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCT                                                                         <  1:24867/100‑1
                                    TCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTA                                                                        <  2:761314/100‑1
                                     CCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTAT                                                                       <  2:1851640/100‑1
                                      CCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      <  1:2783419/100‑1
                                      CCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      <  1:2428772/100‑1
                                      CCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      <  2:2661588/100‑1
                                      CCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      <  1:455984/100‑1
                                       CGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  2:3208839/100‑1
                                       CGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  2:2016501/100‑1
                                       CGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  1:3527112/100‑1
                                       CGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  1:1247805/100‑1
                                        GCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATG                                                                    <  1:1982899/100‑1
                                        GCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATG                                                                    <  1:317655/100‑1
                                        GCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  1:3884683/99‑1
                                         CCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGA                                                                   <  1:1496557/100‑1
                                         CCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGA                                                                   <  1:1434826/100‑1
                                         CCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGA                                                                   <  2:1929086/100‑1
                                          CAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGAC                                                                  <  2:2724161/100‑1
                                           AGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACG                                                                 <  1:1163522/100‑1
                                           AGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACG                                                                 <  2:3712002/100‑1
                                           AGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACG                                                                 <  1:2375833/100‑1
                                            GGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGC                                                                <  1:2384138/100‑1
                                            GGATCGGTGCTGCCAGGCCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATCACGC                                                                <  2:517143/100‑1
                                             ggTCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCT                                                               <  2:2547959/98‑1
                                                   tcCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGCCGCTCG                                                             <  2:606829/94‑1
                                                                                                  aatgtCCGCAAAATGTTGTCATTACAACAAGGCGTCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACGGATGCTGGCGn          <  2:2206011/95‑2
                                                                                                   ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGG         <  1:625496/100‑1
                                                                                                   ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGG         <  1:450133/100‑1
                                                                                                    TAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGG         >  2:2569058/1‑99
                                                                                                     AGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAA       <  1:867452/100‑1
                                                                                                     AGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGA        <  2:3677927/99‑1
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:3895779/1‑100
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:3620418/1‑100
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      <  1:2362092/100‑1
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:1711274/1‑100
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAA       >  1:3753515/1‑99
                                                                                                       CCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATT     <  2:2346693/100‑1
                                                                                                       CCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATT     >  2:3518235/1‑100
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGGCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAA       <  2:1100266/97‑1
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTA    >  1:1311262/1‑100
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTA    >  1:3266289/1‑100
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTA    >  2:160342/1‑100
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      <  2:251103/98‑1
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAn   <  1:1542432/100‑2
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAT   >  2:3596195/1‑100
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAT   <  2:3652852/100‑1
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAT   <  1:1415490/100‑1
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAT   <  2:4125403/100‑1
                                                                                                          CAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCGCGCGCAGTTTGCTATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATT  <  2:178025/100‑1
                                                                                                                                                                                                              
GTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATatagccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269177‑1269275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATT  <  NC_000913/1269313‑1269207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.