| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1923294 = | 108 (0.720) | 18 (0.140) | 8/158 | NT | 16.8% | intergenic (‑325/+71) | pphA/yebY | serine/threonine‑specific protein phosphatase 1/DUF2511 family protein |
| ? | NC_000913 | 1923334 = | 82 (0.620) | intergenic (‑365/+31) | pphA/yebY | serine/threonine‑specific protein phosphatase 1/DUF2511 family protein | |||||
TGGCACCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1923402‑1923294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtttttTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTAGGA > NC_000913/1923334‑1923431 TGGCACCGTTTATAGAACGAGCTGCAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCATCAGTTCTTTCACCACAACGG > 2:3632944/1‑100 GCACCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGC < 1:1050494/100‑1 GCACCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGC < 1:2030026/100‑1 GCACCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGC < 1:2692608/100‑1 ACCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGG < 2:2732467/100‑1 ACCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTAACAAGAACGGGCGG > 2:258055/1‑100 CCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGT < 1:3262593/100‑1 CCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGT < 1:3262124/100‑1 CGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTT > 1:4040651/1‑100 CGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTT < 1:2524970/100‑1 GTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTT > 1:2214929/1‑100 TTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTT > 2:3633474/1‑100 TTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTT < 1:3623125/100‑1 AACGAGTTGAAGATCTCTTTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTGCACCAGAACGGGCGGTTTT < 2:2315411/93‑1 AATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGACATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTC > 2:1298439/1‑100 AATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTC > 1:1049073/1‑100 AATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTC > 2:1141604/1‑100 AATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTC > 2:3725035/1‑100 AATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTC > 1:3963989/1‑100 ATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCT > 1:2590281/1‑100 ATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCT > 2:2041535/1‑100 AAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTAT > 2:932867/1‑100 AAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCCGCTCGTTCTATAA > 1:2227945/1‑100 AAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAA > 1:1384548/1‑100 AAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAA > 1:2185810/1‑100 AACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCACGTTCTATAAACG < 2:2590274/100‑1 ACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTTTTTTTTTTCAAAAGGCAATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGG > 2:1726579/1‑100 ACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGG > 1:1114798/1‑100 ACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAACGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGG > 2:2142823/1‑100 CCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGT > 2:2171184/1‑100 CCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGT > 2:3389982/1‑100 CCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACG > 1:937449/1‑98 CGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTG < 1:1750626/100‑1 CGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTG > 1:4016623/1‑100 CGGTTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTG < 2:183312/100‑1 GGTTTTTTTATTGGAAATCAAAAGGCTAGTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGT < 2:1925808/100‑1 TTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTA < 1:1837892/100‑1 TTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTA > 1:1466235/1‑100 TTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTA < 1:2488482/100‑1 TTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTAGG < 2:759563/100‑1 TTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTTTCCGTTTTTGTTAGGA > 2:3465950/1‑100 TTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTAGGA > 2:295001/1‑100 TTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTAGGA > 2:2051832/1‑100 TTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTCTCAGCTCGTTCTCTAAACGGTGCCAGACTCATTTTTTCGCTCTGTTTGTTAGG > 2:4028541/1‑99 TGGCACCGTTTATAGAACGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1923402‑1923294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtttttTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTAGGA > NC_000913/1923334‑1923431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |