| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3488913 | NA (NA) | 9 (0.060) | 6/166 | NT | NA | noncoding (11/56 nt) | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3488929 | NA (NA) | noncoding (27/56 nt) | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3488809‑3488913‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggatGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGACGC < NC_000913/3488929‑3488833 GCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCAT > 1:1701251/1‑100 CACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATC > 2:4168121/1‑100 CACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATC > 2:1586372/1‑100 ACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCG < 1:1866910/100‑1 CACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGG > 1:1868410/1‑100 CACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGG > 1:2723247/1‑100 CACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGG > 1:3370730/1‑100 CACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGG > 2:698195/1‑100 CCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGct > 2:810731/1‑98 ccgatctTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATG < 1:676907/93‑1 ATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGCAGCCGTAATGCAGGCTAAA‑CCATCGGAc > 2:913242/1‑97 TCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGagatcgg > 2:676906/1‑93 GCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATC < 1:3866362/100‑1 CGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATCC < 1:805181/100‑1 CAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATCCGAT < 2:993219/100‑1 CAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATCCGAT < 2:1868407/100‑1 CAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATCCGAT < 1:81590/100‑1 AGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATCCGATG < 1:1853006/100‑1 GCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATCCGATGG < 2:1819036/100‑1 GCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGATGCGGCGTGAATGCCTTATCCGATGG < 1:1513645/100‑1 ACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGC < 2:3927214/100‑1 CGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGAC < 2:3258763/100‑1 CGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGAC > 1:3690950/1‑100 GGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTTAGCCAAATCCCGTGATGCGGTCGCTGACG > 2:2963872/1‑100 GGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGACG > 2:2188023/1‑100 GGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGACG < 2:791867/100‑1 GATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGACGC < 1:3989128/100‑1 GATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGACGC < 1:1603519/100‑1 GCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAA‑CCATCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3488809‑3488913‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggatGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTACGCCTTCGAATCCCGCAACTTGCGACTCAGCCAAATCCCGTGATGCGGTCGCTGACGC < NC_000913/3488929‑3488833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |