| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3546221 | NA (NA) | 14 (0.100) | 11/166 | NT | NA | intergenic (+22/‑338) | nfuA/gntT | Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system |
| ? | NC_000913 | = 3546253 | NA (NA) | noncoding (32/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3546124‑3546221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACACC < NC_000913/3546253‑3546149 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGTGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC > 2:2771564/1‑100GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC > 1:355269/1‑100GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC > 2:1922512/1‑100 CTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCC < 1:935805/100‑1 CTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCC < 1:1357582/100‑1 TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC < 1:3604988/100‑1 TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC < 1:2392823/100‑1 TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC > 2:2543891/1‑100 TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC < 1:1379393/100‑1 GAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGCTTGCCCG > 2:1342238/1‑100 GAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCG > 2:2767770/1‑100 GAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCCGCGAACACTCCTCCTACTACGTCAACCCCTCTTTTGTAGATCGC > 2:3374620/1‑97 AACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGA > 2:1226207/1‑100 AACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGA > 2:3904768/1‑100 AACGAATTCCCGGAGCTGAAAGGTGTGCGCGACCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCGCCTCTTTTGTAGATTGCCCGA > 1:3983934/1‑100 ACGAATTCCCGGAGCTGAAAGGTGTTCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAACTTATCCCCTCTTTTGTAGATTGCCC < 2:1632017/97‑1 AAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCG < 1:1978920/100‑1 TGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCG < 1:1634585/100‑1 GTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGG < 1:1621470/100‑1 CGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCA < 1:2089250/100‑1 GCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAA < 1:366606/100‑1 GCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAA < 1:1014430/100‑1 GCGACCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTGTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGC < 2:1836843/98‑1 CGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAAT < 1:1597717/100‑1 CGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAAT < 2:162389/100‑1 TCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTA < 1:3117396/100‑1 CTCACCGAACACCAGCGCCGCGAACACTCCCACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTACCGTCGCATCGCGCAATCTAC < 2:2459098/100‑1 CTCACAGAACACCAGCGCGTCGAAGACTCCTACTCCTCCGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCACTCTAC < 2:321059/100‑1 CACCTAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACA < 1:1851123/99‑1 GAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTA < 1:3292113/100‑1 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC > 2:161427/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC > 1:1751279/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC < 2:2398896/100‑1 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC < 1:2917615/100‑1 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC < 1:1360510/100‑1 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC < 1:765154/100‑1 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC > 2:3799473/1‑100 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA < 2:1986576/100‑1 CCCGAAATGACGCTTTAGCGCCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA < 2:3958569/100‑1 CCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC < 1:2233458/100‑1 CCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC > 1:1280043/1‑100 CGAAATGACGCTTGAGCGTCGCATCGGGCAAGCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTAGTGTTCGGTGAGATCGCGCA < 2:4102822/98‑1 AAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACACC < 1:1239417/100‑1 AAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACACC > 1:1027376/1‑100 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3546124‑3546221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACACC < NC_000913/3546253‑3546149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |