New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4589108152 (1.020)30 (0.220) 19/162 NT 17.0% intergenic (‑29/+21) yjiX/yjiY DUF466 family protein/putative transporter
?NC_000913 = 4589112 155 (1.140)intergenic (‑33/+17) yjiX/yjiY DUF466 family protein/putative transporter

GTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4589002‑4589108
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccccgcTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGGCATT  <  NC_000913/4589112‑4589014
                                                                                                                                                                                                              
GTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAA                                                                                                            >  1:500410/1‑100
GTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAA                                                                                                            >  1:1761774/1‑100
 TCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAG                                                                                                           >  2:2139833/1‑100
  CGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTTAGTTACCAAACATAGTTCACTCTAATAAGAACAAAG                                                                                                           >  2:3884364/1‑99
  CGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGC                                                                                                          >  1:3903909/1‑100
  CGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGC                                                                                                          >  1:2575781/1‑100
   GTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTTTTCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGC                                                                                                          >  2:1174297/1‑99
   GTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCC                                                                                                         <  2:1897830/100‑1
   GTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCC                                                                                                         >  2:1151402/1‑100
   GTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCC                                                                                                         >  1:1936175/1‑100
    TAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCC                                                                                                        <  2:3626343/100‑1
     AGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCC                                                                                                       >  2:4096040/1‑100
      GTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCTAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCG                                                                                                      <  2:968461/100‑1
                 CAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGG                                                                                           <  1:2556185/100‑1
                  AATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGC                                                                                          <  1:2375386/100‑1
                   ATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCT                                                                                         <  1:1547741/100‑1
                    TCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTT                                                                                        <  1:3935142/100‑1
                     CAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCTCGCTTCGGCGGGGCTTT                                                                                       <  2:660357/100‑1
                     CAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTT                                                                                       <  2:1083606/100‑1
                     CAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTT                                                                                       <  1:326149/100‑1
                     CAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTT                                                                                       <  2:2257149/100‑1
                      AACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTTG                                                                                      <  2:2741068/100‑1
                      AACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTTG                                                                                      <  2:1971038/100‑1
                       ACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTTGT                                                                                     <  1:3875180/100‑1
                       ACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTTGT                                                                                     <  2:1564333/100‑1
                       ACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTTGT                                                                                     <  2:3238972/100‑1
                                cgGCCTGGCCGAGATATTTTTTTGCGTGTCCTAAGTTGCCAAACATGGTTCACTCTGATAAGAACAAAGCCCCGCTTCGGCGGGGCTTTGTTCTTAT                                                                               <  2:3351930/95‑1
                                       GCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAAC                                                                     >  1:2396084/1‑100
                                                     TTGCCTGTCCTAAGTTACCACACATAGTTCACTCTGATACGAACCAAGACCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTACCT                                                       <  2:189553/100‑1
                                                       GCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTA                                                     >  1:4037869/1‑100
                                                                              AGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGG                              >  1:389065/1‑100
                                                                                      CTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGG                      >  1:1659775/1‑100
                                                                                      CTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGG                      <  2:389064/100‑1
                                                                                       TGATAAGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGC                     >  1:1302291/1‑100
                                                                                          TAAGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAA                  >  1:1700610/1‑100
                                                                                            AGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGA                >  1:1602036/1‑100
                                                                                            AGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGA                >  1:3419713/1‑100
                                                                                            AGAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGA                >  1:3572299/1‑100
                                                                                             GAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCCGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGAT               >  2:2249143/1‑100
                                                                                             GAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCGGGCGGCGAAGA                >  2:3112979/1‑99
                                                                                             GAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGAT               >  2:5135/1‑100
                                                                                             GAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGAT               >  1:1359386/1‑100
                                                                                             GAACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGAT               >  1:537857/1‑100
                                                                                              AACAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATG              >  1:3049503/1‑100
                                                                                                CAAAGCCCCGCCGAAGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTT            >  1:3490392/1‑100
                                                                                                    GCCCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATT        >  1:2477096/1‑100
                                                                                                    GCCCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATT        >  1:117049/1‑100
                                                                                                     CCCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTG       <  1:1787470/100‑1
                                                                                                     CCCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTG       <  1:902469/100‑1
                                                                                                      CCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGG      <  2:258694/100‑1
                                                                                                      CCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGG      <  2:1293953/100‑1
                                                                                                      CCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGG      >  1:1445110/1‑100
                                                                                                      CCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGG      <  1:3115776/100‑1
                                                                                                      CCCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGG      >  1:2308897/1‑100
                                                                                                       CCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTG       <  2:941624/98‑1
                                                                                                       CCGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAACATGTTGATTGGC     >  1:1016688/1‑100
                                                                                                        CGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGGCA    <  2:1561415/100‑1
                                                                                                        CGCTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGGCA    >  2:152260/1‑100
                                                                                                          CTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGGCATT  <  2:2716092/100‑1
                                                                                                                                                                                                              
GTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4589002‑4589108
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccccgcTTCGGCGGGGCTTTGTTCTTATCAGAGTGAACTATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGGCATT  <  NC_000913/4589112‑4589014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.