BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	5537 =	NA (NA)	16 (0.150) +CAGCGCCTGATGCGACGCTGGCGCGT	7/126	NT	NA	intergenic (+7/+146)	yaaX/yaaA	DUF2502 family putative periplasmic protein/peroxide resistance protein, lowers intracellular iron
*	?	NC_000913	832304 =	NA (NA)	16 (0.150) +CAGCGCCTGATGCGACGCTGGCGCGT	7/126	NT	NA	noncoding (16/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 223 total aligned reads displayed.

GCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCAC  >  NC_000913/832205‑832402

 ccgTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCt                                                                                                   <  1:1673248/100‑1 (MQ=255)

 ccgTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACACAAAACTGCCTGATGCGCTACGCt                                                                                                   <  2:1670686/100‑1 (MQ=255)

   gTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTa                                                                                                 <  1:804973/100‑1 (MQ=255)

     ccGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGCTGAACAAACGCAAAACTGCCTGATGCGCTACGCTTAt                                                                                                >  2:866390/1‑99 (MQ=255)

     ccGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATc                                                                                               <  2:2274758/100‑1 (MQ=255)

       gcgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg                                                                                             <  1:829987/100‑1 (MQ=255)

        cgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg                                                                                            <  1:3135239/100‑1 (MQ=255)

        cgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg                                                                                            >  1:1379703/1‑100 (MQ=255)

         gTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGc                                                                                           <  1:1413036/100‑1 (MQ=255)

             aCCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc                                                                                       <  1:2524728/100‑1 (MQ=255)

             aCCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc                                                                                       <  2:3175969/100‑1 (MQ=255)

                tGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTg                                                                                    <  2:757445/100‑1 (MQ=255)

                tGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGAAAAACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTg                                                                                    <  2:262809/100‑1 (MQ=255)

                  ccGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGaa                                                                                  >  2:2998707/1‑100 (MQ=255)

                   cGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAc                                                                                 <  2:3583019/100‑1 (MQ=255)

                    gCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                >  1:1577669/1‑100 (MQ=255)

                     cTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAActc                                                                               <  1:1611293/100‑1 (MQ=255)

                     cTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCAGCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAActc                                                                               <  2:272712/100‑1 (MQ=255)

                         gcAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCa                                                                           <  1:2961959/100‑1 (MQ=255)

                          cAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCaa                                                                          >  1:824406/1‑100 (MQ=255)

                            gTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAata                                                                        <  1:1627720/100‑1 (MQ=255)

                             tAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAatat                                                                       >  2:1958733/1‑100 (MQ=255)

                             tAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAatat                                                                       <  1:547094/100‑1 (MQ=255)

                              aaTCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAatata                                                                      <  2:1141525/100‑1 (MQ=255)

                                tCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATAtt                                                                    <  2:550654/100‑1 (MQ=255)

                                 cTTTTATGCCGGGCTAT‑GGCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATTCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATTTATTg                                                                   >  2:3718505/1‑100 (MQ=255)

                                 cTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCCGGCCTACATGAACTCTGCAATATCtt                                                                    >  2:1884350/1‑99 (MQ=255)

                                 cTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTg                                                                   >  2:1348180/1‑100 (MQ=255)

                                 cTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTg                                                                   >  1:1312364/1‑100 (MQ=255)

                                  cctgaTGCCGGGCATA‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGa                                                                  >  1:3187352/5‑100 (MQ=21)

                                   tttATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGaa                                                                 >  2:4026080/1‑100 (MQ=255)

                                    tgaTGCCGGGC‑ATAGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAAt                                                                >  2:42840/3‑100 (MQ=25)

                                    ctATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAAt                                                                <  2:57071/99‑1 (MQ=255)

                                       tGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                             >  2:2961776/1‑100 (MQ=255)

                                       tGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                             <  2:2177173/100‑1 (MQ=255)

                                       tGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                             <  1:3587580/100‑1 (MQ=255)

                                        gCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGc                                                            >  1:2023149/1‑100 (MQ=255)

                                        gCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGc                                                            <  1:3000529/100‑1 (MQ=255)

                                        gCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCCACGCGAACTCTGCAATATATTTAATTTGc                                                            >  2:3260800/1‑100 (MQ=255)

                                         ccGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                           <  2:1373271/100‑1 (MQ=255)

                                         ccGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                           >  1:3646677/1‑100 (MQ=255)

                                           gggCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATg                                                         <  1:3426177/100‑1 (MQ=255)

                                           gcgCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGGTTATCAGGCCTACGTGAACTCTGCAATTTATTGAATTTGCATg                                                         <  2:2080755/98‑1 (MQ=255)

                                              gctgaatgccggattgttacccggcattcagcgcctgatgcgacgctggcgcgtCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCt                                                       >  1:3879332‑M2/55‑100 (MQ=255)

                                              gctgaatgccggattgttacccggcattcagcgcctgatgcgacgctggcgcgtCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCt                                                       >  1:340991‑M2/55‑100 (MQ=255)

                                                 t‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTg                                                   >  2:3047410/1‑100 (MQ=255)

                                                 t‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTg                                                   <  2:1038909/100‑1 (MQ=255)

                                                 gaatgccggattgttacccggcattcagcgcctgatgcgacgctggcgcgtCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCtttt                                                    >  2:4082502‑M2/52‑100 (MQ=255)

                                                 gaatgccggattgttacccggcattcagcgcctgatgcgacgctggcgcgtCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCtttt                                                    >  1:2439411‑M2/52‑100 (MQ=255)

                                                     ccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAg                                                <  1:127271/100‑1 (MQ=255)

                                                      cGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAgg                                               <  1:1823819/100‑1 (MQ=255)

                                                      cGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAgg                                               <  1:4190581/100‑1 (MQ=255)

                                                       ggCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGc                                              <  1:1799572/100‑1 (MQ=255)

                                                          aTCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCgg                                           <  2:2206387/100‑1 (MQ=255)

                                                           tCAGGCTGATGAACAAACGCACAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGTCCGGa                                          >  2:2068449/1‑100 (MQ=255)

                                                            cAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATTAGGCCTACGTGAACTCTGCAACATATTGAATTTGCATGCTTTTGTAGGcccg                                           >  2:3687600/1‑96 (MQ=255)

                                                            cAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGAt                                         >  2:3818967/1‑100 (MQ=255)

                                                              ggCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATaa                                       >  1:2846082/1‑100 (MQ=255)

                                                               gCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGAtgcg                                      >  2:75441/1‑97 (MQ=255)

                                                               gCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAg                                      <  1:2157979/100‑1 (MQ=255)

                                                                cTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAgg                                     >  1:701082/1‑100 (MQ=255)

                                                                cTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAgg                                     <  2:3079737/100‑1 (MQ=255)

                                                                cTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAgg                                     >  1:2697266/1‑100 (MQ=255)

                                                                cTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAgg                                     <  2:2477554/100‑1 (MQ=255)

                                                                  gatgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCg                                   <  2:661436/100‑1 (MQ=255)

                                                                   atgaACAAACGCAAAACTGCCTGATGCGCTACGCGTATCAGTCCGACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGt                                  <  2:3997752/100‑1 (MQ=255)

                                                                      aaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTa                               >  1:838284/1‑100 (MQ=255)

                                                                      aaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGCAGGCCCGATAAGGCGTTTa                               >  2:3533285/1‑100 (MQ=255)

                                                                       aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAc                              >  1:184048/1‑100 (MQ=255)

                                                                       aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAc                              >  1:3351704/1‑100 (MQ=255)

                                                                        cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACTTGTACTCTGCAATATATTGAATTTGCATGCTTTTTTAGGCCGGATAAGGCGGTTAcg                             <  2:2493525/100‑1 (MQ=17)

                                                                        cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcg                             <  1:4057932/100‑1 (MQ=255)

                                                                           aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgccg                          >  1:4088666/1‑100 (MQ=255)

                                                                                aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                     <  1:1150155/100‑1 (MQ=255)

                                                                                   cTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                  <  1:2531164/100‑1 (MQ=255)

                                                                                   cTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                  >  1:247682/1‑100 (MQ=255)

                                                                                   cTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACGCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGc                  <  2:1454043/100‑1 (MQ=14)

                                                                                    ggCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                 >  2:482481/2‑100 (MQ=255)

                                                                                     gCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcct                <  1:2243227/100‑3 (MQ=14)

                                                                                      ccTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAtt               >  1:3251088/1‑100 (MQ=255)

                                                                                        tGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTc             >  2:1308671/1‑100 (MQ=255)

                                                                                        tGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTc             >  2:2406726/1‑100 (MQ=255)

                                                                                        tGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTc             >  1:11173/1‑100 (MQ=255)

                                                                                         gATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTca            <  1:1033696/100‑1 (MQ=255)

                                                                                          gatctcTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac           <  1:413828/95‑1 (MQ=255)

                                                                                          aTGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac           <  2:1590371/100‑1 (MQ=255)

                                                                                          aTGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac           <  2:1089470/100‑1 (MQ=255)

                                                                                          aTGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac           <  1:3459287/100‑1 (MQ=255)

                                                                                          aTGCGCTACGCTTATCAGGCCTACGTGAACACTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac           <  2:38999/100‑1 (MQ=255)

                                                                                           tGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcaca          <  1:1532219/100‑1 (MQ=255)

                                                                                           tGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcaca          >  1:3064843/1‑100 (MQ=255)

                                                                                            gcgcTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaa         <  2:3975092/100‑1 (MQ=255)

                                                                                            gcgcTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaa         <  1:624086/100‑1 (MQ=255)

                                                                                             cgcTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaac        <  1:1304109/100‑1 (MQ=255)

                                                                                             cgcTACGCCCATCAGGCCTCCGTGCACTCTGCAATATATTCAATTTGCATGCTTTTGTATGCCGGAACAGACGTCTACCCCGCCTCCGGCATTTcac           >  2:3363752/1‑97 (MQ=18)

                                                                                               cTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcacagatc      >  2:413827/1‑96 (MQ=255)

                                                                                               cTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCATTTCAaaacaa      >  1:1104120/1‑100 (MQ=255)

                                                                                                tACGCTTATCAGGCCTACGTGAACTCTGCCATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGTCGTTTACGCCGTATCCGGCATTTCACAACAAg     <  1:3982281/100‑1 (MQ=255)

                                                                                                 aCGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGc    <  1:42840/100‑1 (MQ=255)

                                                                                                  cGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCa   <  1:2542136/100‑1 (MQ=255)

GCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCAC  >  NC_000913/832205‑832402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.