New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2617968 =NA (NA)12 (0.090) 8/164 NT NA noncoding (1/37 nt) REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2618001 = NA (NA)noncoding (34/37 nt) REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 190 total aligned reads displayed.

CGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAA  >  NC_000913/2617902‑2618100
                                                                                                   |                                                                                                   
cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                                                                                     <  2:3230999/100‑1 (MQ=255)
cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                                                                                     <  1:3665334/100‑1 (MQ=255)
cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                                                                                     <  1:1387122/100‑1 (MQ=255)
 gtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCt                                                                                                    <  1:1911475/100‑1 (MQ=255)
  tcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTa                                                                                                   >  2:3480210/1‑100 (MQ=255)
   attgtcggatgcggcgcgagcgccttaaccgaactacgcgaagttaatccgtagtattcgtagGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                                                                                     >  2:413787‑M1/64‑97 (MQ=255)
    ttgtcggatgcggcgcgaacgccttatccgaactacgcgaagttaatccatagtattcgtagGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACg                                                                                                 >  1:1333194‑M1/63‑100 (MQ=255)
    ccccGGAGCAGGTACTGTAAATCCTGGCTTTAGCTGTGCTCCCTCGCTAGTTGAAGCACATTGGAGGATTCGACTCTTGTCACGTCTTATCCGGCCTACg                                                                                                 <  2:2071372/98‑1 (MQ=255)
    cACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTAc                                                                                                  <  2:447617/99‑1 (MQ=255)
    cACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACg                                                                                                 >  2:3326484/1‑100 (MQ=255)
    cACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGAGGCGACGCTTGCCACGTCTTATCCGGCCTACg                                                                                                 >  1:1441732/1‑100 (MQ=255)
     aCCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGa                                                                                                >  1:1287299/1‑100 (MQ=255)
      ccGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGaa                                                                                               <  1:597026/100‑1 (MQ=255)
       cGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAAt                                                                                              >  2:536021/1‑100 (MQ=255)
       cGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAAt                                                                                              <  2:3355715/100‑1 (MQ=255)
            cAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTAt                                                                                         >  1:33108/1‑100 (MQ=255)
             aGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATg                                                                                        <  1:1097550/100‑1 (MQ=255)
                tACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGAt                                                                                     <  2:3955507/100‑1 (MQ=255)
                 aCTGGCAATCGTGGGGTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATgg                                                                                       >  2:3594965/1‑97 (MQ=255)
                 aCTGGAAATCGTGGGTTAAGATGTGCTTCATCGCTCGTTGAAGCACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTTCGAGTACTATgg                                                                                       >  2:1562586/1‑97 (MQ=25)
                 aCTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGAtt                                                                                    >  2:960579/1‑100 (MQ=255)
                 aCTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGAtt                                                                                    >  1:1135507/1‑100 (MQ=255)
                   tGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTaa                                                                                  >  2:3756855/1‑100 (MQ=255)
                    ggAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAAc                                                                                 <  1:536022/100‑1 (MQ=255)
                    ggAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAAc                                                                                 >  1:2924974/1‑100 (MQ=255)
                    ggAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAAc                                                                                 >  1:3168043/1‑100 (MQ=255)
                    ggAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAAc                                                                                 >  1:4063905/1‑100 (MQ=255)
                    ggAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAAc                                                                                 >  2:76748/1‑100 (MQ=255)
                        aTCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTcg                                                                             <  1:162270/100‑1 (MQ=255)
                        aTCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTcg                                                                             <  1:3041923/100‑1 (MQ=255)
                          cGTGGGTTAAGATGTGCTCCATCGCAAGTTGAAGCACATTGACGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTcgc                                                                            >  2:751289/1‑99 (MQ=255)
                           gTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGt                                                                          <  2:3617305/100‑1 (MQ=255)
                           gTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGt                                                                          <  1:2518442/100‑1 (MQ=255)
                                 tAAGATGTGCTCCATCGCTAGTTGAAGCACATAGCCGGAAGCTACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCg                                                                    <  2:2946404/100‑1 (MQ=255)
                                  aaGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCgg                                                                   <  1:2745180/100‑1 (MQ=255)
                                  aaGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCgg                                                                   <  2:2096341/100‑1 (MQ=255)
                                   aGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGa                                                                  >  1:624641/1‑100 (MQ=255)
                                    gATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGAt                                                                 <  1:3257219/100‑1 (MQ=255)
                                       gtgCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAg                                                              <  1:3631060/100‑1 (MQ=255)
                                       gtgCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAg                                                              >  2:1100564/1‑100 (MQ=255)
                                       gtgCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAg                                                              >  1:2235186/1‑100 (MQ=255)
                                        tgCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAgg                                                             <  1:845515/100‑1 (MQ=255)
                                        tgCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAgg                                                             >  2:325341/1‑100 (MQ=255)
                                         gCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGCTAAGGc                                                            >  2:1549523/1‑100 (MQ=255)
                                         gCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGc                                                            >  1:2115121/1‑100 (MQ=255)
                                            ccATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGtt                                                         >  2:3064208/1‑100 (MQ=255)
                                             cATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTc                                                        >  1:250319/1‑100 (MQ=255)
                                              aTCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTcg                                                       >  1:2659101/1‑100 (MQ=255)
                                               taatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTcgc                                                      >  2:3682838‑M2/53‑100 (MQ=255)
                                                 gCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCgcgc                                                    <  1:2007407/100‑1 (MQ=255)
                                                 gCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATCAACTTCGCGTAGTTCGGATAAGGCGTTCgcgc                                                    >  2:2767164/1‑100 (MQ=255)
                                                  cTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGcgcc                                                   <  1:3946824/100‑1 (MQ=255)
                                                   tAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGcgccg                                                  <  2:3664573/100‑1 (MQ=255)
                                                   tAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGcgccg                                                  <  1:2524248/100‑1 (MQ=255)
                                                   tAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGcgccg                                                  <  2:137071/100‑1 (MQ=255)
                                                    aGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGcgccgc                                                 >  1:16930/1‑100 (MQ=255)
                                                    aGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGcgccgc                                                 <  2:2300133/100‑1 (MQ=255)
                                                      ttGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCAt                                               <  2:1883533/100‑1 (MQ=255)
                                                       tGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATc                                              >  2:1276309/1‑100 (MQ=255)
                                                        gAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATcc                                             >  1:99145/1‑100 (MQ=255)
                                                          aGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATccag                                           >  2:3748439/1‑98 (MQ=255)
                                                          aGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGa                                           >  1:270742/1‑100 (MQ=255)
                                                           gCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAc                                          <  1:777462/100‑1 (MQ=255)
                                                           gCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAc                                          <  1:961616/100‑1 (MQ=255)
                                                           gCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAc                                          <  1:1925501/100‑1 (MQ=255)
                                                              cgttGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAt                                       >  1:2853557/3‑100 (MQ=255)
                                                              caTTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTGGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACaa                                        >  2:3340689/1‑99 (MQ=255)
                                                                    cggataagacgtggcaagcgtcgcatccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAacac                                 >  2:1347793‑M2/32‑100 (MQ=255)
                                                                     ggataagacgtggcaagcgtcgcatccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATaaacaga                                >  2:941645‑M2/31‑98 (MQ=255)
                                                                     ggataagacgtggcaagcgtcgcatccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACAcc                                >  2:1791276‑M2/31‑100 (MQ=255)
                                                                     ggataagacgtggcaagcgtcgcatccggcCCACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACAcc                                >  1:633756‑M2/31‑100 (MQ=255)
                                                                     GGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACAcc                                >  1:3090069‑M1/1‑100 (MQ=255)
                                                                     GGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACAcc                                <  2:70350‑M1/100‑1 (MQ=255)
                                                                        taagacgtggcaagcgtcgcatccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTa                             >  1:1422510‑M2/28‑100 (MQ=255)
                                                                        TGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTa                             >  2:3473610‑M1/1‑100 (MQ=255)
                                                                          cGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATc                           >  1:2253971/1‑100 (MQ=255)
                                                                           gACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCt                          <  1:1209004/100‑1 (MQ=255)
                                                                             cGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTAc                        >  2:1671238/1‑100 (MQ=255)
                                                                              gCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACa                       >  1:3494889/1‑100 (MQ=255)
                                                                               cTTGCCACGTCTTATCCGGCCTACGAATGCTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATACACACGTTATCTACaa                      >  2:19833/1‑100 (MQ=255)
                                                                                ttGCCACGTCTTATTCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAAc                     <  2:2859304/100‑1 (MQ=255)
                                                                                    cACGTCTTATCCGGCCTACGAATACTATGGAGTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCa                 <  1:2339273/100‑1 (MQ=255)
                                                                                     aCGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAg                <  1:2151606/100‑1 (MQ=255)
                                                                                      cGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGa               >  1:3703663/1‑100 (MQ=255)
                                                                                       gTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGaa              >  1:3284137/1‑100 (MQ=255)
                                                                                       gTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGaa              <  1:3782529/100‑1 (MQ=255)
                                                                                        tCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAt             <  2:1489506/100‑1 (MQ=255)
                                                                                        tCTTATCCGGCCTACGAATACTATGGATCAACGTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAt             <  2:865984/100‑1 (MQ=255)
                                                                                         cTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtt            <  1:1810077/100‑1 (MQ=255)
                                                                                           tATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttc          >  1:320583/1‑100 (MQ=255)
                                                                                             tccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctt        <  2:2128855‑M2/94‑1 (MQ=255)
                                                                                              ccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttcttt       <  2:4065573‑M2/95‑1 (MQ=255)
                                                                                              ccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttcttt       >  1:1654347‑M2/6‑100 (MQ=255)
                                                                                              ccggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttcttt       <  1:462888‑M2/95‑1 (MQ=255)
                                                                                               cggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctttc      >  2:3016327‑M2/5‑100 (MQ=255)
                                                                                               cggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctttc      >  2:1589608‑M2/5‑100 (MQ=255)
                                                                                               cggcCTACGAATACGATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctttc      <  2:408379‑M2/96‑1 (MQ=255)
                                                                                                ggcCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTca     >  2:3393326‑M2/4‑100 (MQ=255)
                                                                                                  cCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTcaca   >  1:297455‑M2/2‑100 (MQ=255)
                                                                                                   cTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACaa  <  2:1422507/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAA  >  NC_000913/2617902‑2618100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.