New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2662311 =NA (NA)13 (0.090) 8/168 NT NA noncoding (3/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 2662337 = NA (NA)noncoding (29/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 240 total aligned reads displayed.

ATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGT  >  NC_000913/2662238‑2662436
                                                                                                   |                                                                                                   
 ccgaataacagccgttgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgtacagaaccccagggCGGATGCGGCGTGAACGCCATATCCGcc                                                                                                    >  2:607612‑M1/73‑100 (MQ=255)
   atccgacagccgttgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgtacagaaccccagggCGGATGCGGCGTGAACGCCATATCCGCCCt                                                                                                  >  1:1021243‑M1/71‑100 (MQ=255)
      cgacagccgttgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgtacagaaccccagggCGGATGCGGCGTGAACGCCATATCCGCCCTggg                                                                                               >  1:3694753‑M1/68‑100 (MQ=255)
       tGACTGTTTTAGTCGCGTCTTTAACCTTCAGTGCCATTTTTTTATCGTCCCGTTTGTCCCTGTTGTCGGATGCGGCGTCAACGCCATATCCGCCCTaggg                                                                                              <  2:3835444/100‑1 (MQ=37)
       tGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTgggg                                                                                              >  2:1921379/1‑100 (MQ=255)
        gACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCTGATGCGGCGTGAACGCCATATCCGCCCTcggg                                                                                              >  1:1145562/1‑99 (MQ=255)
        gACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGt                                                                                             >  2:3288916/1‑100 (MQ=255)
            gATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTg                                                                                         >  1:3595764/1‑100 (MQ=255)
            gATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTg                                                                                         >  1:256516/1‑100 (MQ=255)
            gATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTg                                                                                         <  1:3709317/100‑1 (MQ=255)
             aTTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGt                                                                                        >  1:3226951/1‑100 (MQ=255)
                tAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGTATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTaca                                                                                     <  2:4005080/100‑1 (MQ=255)
                 aGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTacac                                                                                    >  2:3412706/1‑100 (MQ=255)
                  gTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   >  1:501751/1‑100 (MQ=255)
                  gTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   <  1:2778594/100‑1 (MQ=255)
                  gTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   <  1:1311357/100‑1 (MQ=255)
                  gTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   <  2:821000/100‑1 (MQ=255)
                  gTCGAGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   <  2:3323291/100‑1 (MQ=255)
                    cGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGt                                                                                 >  2:1626658/1‑100 (MQ=255)
                    cGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGt                                                                                 <  1:11097/100‑1 (MQ=255)
                         aTTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGcc                                                                            >  1:1437234/1‑100 (MQ=255)
                           ttAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTg                                                                          >  2:2180258/1‑100 (MQ=255)
                            tAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCt                                                                           >  1:632849/1‑98 (MQ=255)
                            tAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGa                                                                         <  1:431997/100‑1 (MQ=255)
                             aaCCTTCAGTGCCATTTTTTTATCGTGGCGCTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTATACACTGTAGGCCTGAt                                                                        <  2:2798404/100‑1 (MQ=255)
                              aCCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATa                                                                       <  1:3418808/100‑1 (MQ=255)
                                cTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAg                                                                     <  1:2526677/100‑1 (MQ=255)
                                     gTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCa                                                                <  1:2480633/100‑1 (MQ=255)
                                      tGCCATGTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCAt                                                               <  2:1022497/100‑1 (MQ=255)
                                         cATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAc                                                            >  1:2292663/1‑100 (MQ=255)
                                         cATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAc                                                            <  2:642392/100‑1 (MQ=255)
                                         cATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAc                                                            >  1:3086705/1‑100 (MQ=255)
                                          aTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAcg                                                           >  1:407327/1‑100 (MQ=255)
                                           tttttttATAGTGTCGTTTTTATGTGTTGTCGGCTTCGTCGTGAACGCCATATCCGCCCTGCGGTTCTGTTCACCGTAGGACTGATCAGTCGCATTAc                                                            <  2:150725/98‑1 (MQ=255)
                                            ttttttATCGTTGCGTTTGTACCTGTTGTCGGATGCGGCGTGAATGCCATATACGTCCTGGGGTTCTGTACACTGTAGGCCTGATAATCCGCATTatg                                                           >  2:3981494/1‑96 (MQ=21)
                                            ttttttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAcgcg                                                         <  2:937084/100‑1 (MQ=255)
                                            ttttttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAcgcg                                                         <  1:913557/100‑1 (MQ=255)
                                                ttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGc                                                     <  1:3138047/100‑1 (MQ=255)
                                                   tCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCacc                                                  <  1:2847718/100‑3 (MQ=255)
                                                   tCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATc                                                  <  1:2256270/100‑1 (MQ=255)
                                                    cGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCa                                                 <  2:1613311/100‑1 (MQ=255)
                                                    cGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCa                                                 <  1:1816220/100‑1 (MQ=255)
                                                    cGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGCTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCa                                                 >  1:2487573/1‑100 (MQ=255)
                                                     gTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg                                                <  1:762309/100‑1 (MQ=255)
                                                     gTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg                                                <  1:2278932/100‑1 (MQ=255)
                                                     gTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg                                                >  2:477216/1‑100 (MQ=255)
                                                     gTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg                                                >  2:859208/1‑100 (MQ=255)
                                                     gTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGGTCTGTACAATGTAGGCCTGATAAGACGCATTACCCGTCGCATCa                                                 >  1:582493/1‑99 (MQ=255)
                                                      tGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAgg                                               <  1:3348521/100‑1 (MQ=255)
                                                       ggggTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGc                                              <  1:3022392/97‑1 (MQ=255)
                                                         cGTTTGTCCCTGTTGTCCGATGCGGCGTGAACGCGATAGTCGCCCTGGGGTCCTGTACACTGTGGCCCTGATAAGACGCAGTACGCGTCGCATCa                                                 >  2:1273659/1‑95 (MQ=18)
                                                          gTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAAc                                           <  1:1921382/100‑1 (MQ=255)
                                                            ttGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACgg                                         <  2:2073826/100‑1 (MQ=255)
                                                             tGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGc                                        <  2:2381383/100‑1 (MQ=255)
                                                             tGTACCTGTTGTCGGATGCGGCGTGAACGCAATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCACCgac                                        >  2:2655256/1‑98 (MQ=255)
                                                              gTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGCGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                       >  2:3914127/1‑100 (MQ=255)
                                                               tACCTGTTGTCGGATGCGGCGTTAACGACATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGc                                        <  2:3208194/98‑1 (MQ=255)
                                                               tACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTg                                      >  1:3997312/1‑100 (MQ=255)
                                                                  cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg                                   <  1:3301650/100‑1 (MQ=255)
                                                                  cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg                                   <  1:3468065/100‑1 (MQ=255)
                                                                  cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg                                   <  1:1073642/100‑1 (MQ=255)
                                                                   tgttgtCGGATGCGGCGTGCACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCgg                                  >  2:2300882/1‑100 (MQ=255)
                                                                   tgttgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCgg                                  >  1:1671838/1‑100 (MQ=255)
                                                                      gggcggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg                               >  1:789863‑M2/30‑100 (MQ=255)
                                                                       gtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGttattcgg                              >  2:1852263/1‑93 (MQ=11)
                                                                       gtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgc                              >  2:2915333/1‑100 (MQ=255)
                                                                       gtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgc                              >  2:3441295/1‑100 (MQ=255)
                                                                       ggcggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgc                              >  1:186940‑M2/29‑100 (MQ=255)
                                                                        gcggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg                             >  1:873148‑M2/28‑100 (MQ=255)
                                                                        gcggatatggcgttcacgccatatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg                             >  1:1763680‑M2/28‑100 (MQ=255)
                                                                         CGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcgg                            <  1:1677121‑M1/100‑1 (MQ=255)
                                                                          ggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                           >  1:23596‑M2/26‑100 (MQ=255)
                                                                          ggatatggcgttcacgccatatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                           >  1:2230400‑M2/26‑100 (MQ=255)
                                                                          GGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                           >  2:3708921‑M1/1‑100 (MQ=255)
                                                                          GGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                           <  1:1590928‑M1/100‑1 (MQ=255)
                                                                             TGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTg                        >  1:437539‑M1/1‑100 (MQ=255)
                                                                             TGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTg                        >  1:3870877‑M1/1‑100 (MQ=255)
                                                                               cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGaa                      >  1:2535855/1‑100 (MQ=255)
                                                                               cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGaa                      >  2:2741106/1‑100 (MQ=255)
                                                                               cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGaa                      >  2:2199301/1‑100 (MQ=255)
                                                                               cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGaa                      >  1:1497043/1‑100 (MQ=255)
                                                                                  cgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGc                   >  2:4123965/1‑100 (MQ=255)
                                                                                    ttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCt                 >  1:3787446‑M2/16‑100 (MQ=255)
                                                                                    tGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCt                 <  2:2649855/100‑1 (MQ=255)
                                                                                     gAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCtt                >  1:1868687/1‑100 (MQ=255)
                                                                                         gCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATcc            <  1:1024815/100‑1 (MQ=255)
                                                                                         gCCATATCCGCCCTGGGGTTCTGTACACTGTAGCCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATcc            <  2:1237962/100‑1 (MQ=255)
                                                                                         gCCATATCCGCCCTACGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATcc            <  2:1865335/100‑1 (MQ=12)
                                                                                          ccATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCg           >  2:3077370/1‑100 (MQ=255)
                                                                                          ccATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCg           <  2:1981265/100‑1 (MQ=255)
                                                                                           cATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGAGAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATcc            <  1:976704/98‑1 (MQ=255)
                                                                                            atatCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAc         <  1:1550571/100‑1 (MQ=255)
                                                                                              atccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCt       >  2:146130‑M2/6‑100 (MQ=255)
                                                                                                ccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTAc     >  1:2655465‑M2/4‑100 (MQ=255)
                                                                                                ccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCATATCCGACCTAc     <  1:2757641‑M2/97‑1 (MQ=255)
                                                                                                ccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGCGAACGCCGTATCCGa          >  2:2599057‑M2/4‑95 (MQ=255)
                                                                                                ccgCCCTGCGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTAc     <  2:248423‑M2/97‑1 (MQ=255)
                                                                                                 cgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGCCGCATTACGCGTCGCATCAGGCAACGGCTGTCAGATGTGCCGGGAACCCCTTATCCGAcc        >  2:1002583‑M2/3‑96 (MQ=255)
                                                                                                 cgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACg    >  2:3559533‑M2/3‑100 (MQ=255)
                                                                                                 cgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACg    >  1:1252991‑M2/3‑100 (MQ=255)
                                                                                                   |                                                                                                   
ATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGT  >  NC_000913/2662238‑2662436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.