New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4317917 =NA (NA)20 (0.150) 9/164 NT NA noncoding (1/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4317949 = NA (NA)noncoding (33/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 284 total aligned reads displayed.

GCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGA  >  NC_000913/4317850‑4318048
                                                                                                   |                                                                                                   
gcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     >  1:1398846‑M1/68‑100 (MQ=255)
gCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     <  1:3213331/100‑1 (MQ=255)
gCTGGTGCAGGATGAAGGGTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGACGGGACCCTGACGCGTCTTATCCGAcc                                                                                                     >  2:448212/1‑100 (MQ=255)
 cTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCt                                                                                                    >  2:3125033/1‑100 (MQ=255)
  tGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCACCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGCCCTa                                                                                                   >  1:3422655/1‑100 (MQ=255)
   ggTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTAc                                                                                                  >  1:1618821/1‑100 (MQ=255)
     tGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgg                                                                                                <  1:628123/100‑1 (MQ=255)
     ngCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgg                                                                                                >  2:1734410/2‑100 (MQ=255)
      gCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACggg                                                                                               <  1:1450836/100‑1 (MQ=255)
      gCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCCCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCACCCTACggg                                                                                               >  1:118850/1‑100 (MQ=255)
       cAGGATGAAGTTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgggg                                                                                              <  2:2086752/100‑1 (MQ=255)
       cAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgggg                                                                                              >  1:2238345/1‑100 (MQ=255)
         ggATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAg                                                                                            <  2:3054670/100‑1 (MQ=255)
         ggATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAg                                                                                            >  2:3972715/1‑100 (MQ=255)
         ggATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAg                                                                                            >  2:3354100/1‑100 (MQ=255)
         ggATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAg                                                                                            <  2:2785496/100‑1 (MQ=255)
           aTGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcg                                                                                          <  1:3275300/100‑1 (MQ=255)
             gAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCa                                                                                        <  1:2856431/100‑1 (MQ=255)
               aGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                                                      >  1:3536178/1‑100 (MQ=255)
                ggTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAttt                                                                                     <  1:197612/100‑1 (MQ=255)
                ggTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAttt                                                                                     >  1:3284095/1‑100 (MQ=255)
                 gTTTTACTTACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGCGTGTCGTATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAttt                                                                                     <  2:1235356/99‑1 (MQ=255)
                 gTTTTACTGACGTTTTGTACGTTAATCATTTTTCTTTTTTTTTTTCGTTTGTCGTATGCTACTCTGACGCGTCTTATCCGACCTACGGGGAGCGCAttt                                                                                     >  2:2156454/1‑99 (MQ=21)
                   tttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa                                                                                  <  2:1633987/100‑1 (MQ=255)
                     tACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAgg                                                                                <  1:3683202/100‑1 (MQ=255)
                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                                                              >  1:202638/1‑100 (MQ=255)
                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                                                              >  1:3568471/1‑100 (MQ=255)
                        tGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTTACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCg                                                                             >  2:1153216/1‑100 (MQ=255)
                            gTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATa                                                                         <  2:1901062/100‑1 (MQ=255)
                            gTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATa                                                                         <  2:1378627/100‑1 (MQ=255)
                                tGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGc                                                                     <  2:150226/100‑1 (MQ=255)
                                 gTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCg                                                                    <  2:2537788/100‑1 (MQ=255)
                                 gTACGTTAATCATTGTTCGCCTCGTGGTTCGGGTGGCGGATGCGCGGCTGACGCGTCTTATCCGACCTACGGGGCGCTCATTTGTAGGCCGGATAAg                                                                       >  2:3471052/1‑97 (MQ=25)
                                  tACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGt                                                                   <  1:2289352/100‑1 (MQ=255)
                                   aCGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGtt                                                                  >  1:299157/1‑100 (MQ=255)
                                   aCGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGtt                                                                  <  1:2533028/100‑1 (MQ=255)
                                   aCGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGtt                                                                  <  1:75662/100‑1 (MQ=255)
                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                                                 >  1:2774074/1‑100 (MQ=255)
                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGtt                                                                  >  2:1049704/1‑99 (MQ=255)
                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGt                                                                   <  2:2601706/98‑1 (MQ=255)
                                         aTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                            <  2:2204579/100‑1 (MQ=255)
                                         aTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                            <  1:2477602/100‑1 (MQ=255)
                                          tCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgccg                                                           <  1:2314486/100‑1 (MQ=255)
                                            aTTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                         <  1:126523/100‑1 (MQ=255)
                                             cctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                        >  2:1812151‑M2/55‑100 (MQ=255)
                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCCTCTTATCCGACCTACGGGTGGCGCATTTGTAGGCCGGATAAGGCGGTTACGCCGCCTcc                                                      >  1:864705/1‑100 (MQ=18)
                                                ttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                                                     <  1:292044/100‑1 (MQ=255)
                                                ttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                                                     <  1:687310/100‑1 (MQ=255)
                                                  cGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                   <  1:97925/100‑1 (MQ=255)
                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                  <  1:1672975/100‑1 (MQ=255)
                                                   gCCTCGTGGTTCGGGTGTCGCATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGCTAAGGCGTTTACGCCGCATCCGGc                                                   >  2:2090478/1‑99 (MQ=255)
                                                       cGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCgg                                              >  2:3779138/1‑100 (MQ=255)
                                                        gTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGc                                             >  2:684763/1‑100 (MQ=255)
                                                         tGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCt                                            <  1:3790754/100‑1 (MQ=255)
                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTc                                           >  1:1047599/1‑100 (MQ=255)
                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTc                                           >  2:1188825/1‑100 (MQ=255)
                                                            ttagggTGCCGGATGCGACGCTGACGCGTCTTATGCGACCTACGGGGAGCGCATTTGTAAGCCGGAGAAGGCGTTTACGCCCCATCCGACACCGCCTCaa                                         >  2:412214/4‑100 (MQ=17)
                                                            ttCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCaa                                         >  2:1933389/1‑100 (MQ=255)
                                                             tCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAAt                                        <  1:2614828/100‑1 (MQ=255)
                                                               gggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTc                                      <  2:3210084/100‑1 (MQ=255)
                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  1:4087660/100‑1 (MQ=255)
                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  2:2394326/100‑1 (MQ=255)
                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  2:3594596/100‑1 (MQ=255)
                                                                  tgtCGTATGCGATGCTGACGTGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCTTATAAGGTTTTTACGCCGCATCCGGCACCg                                               <  2:2640228/88‑1 (MQ=17)
                                                                  tgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGc                                   <  1:1543678/100‑1 (MQ=255)
                                                                  ggtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGc                                   >  2:2619525‑M2/34‑100 (MQ=255)
                                                                   gtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATCAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  >  2:3616859‑M2/33‑100 (MQ=255)
                                                                   GTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  <  1:1315870‑M1/100‑1 (MQ=255)
                                                                    TCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaa                                 >  1:414583‑M1/1‑100 (MQ=255)
                                                                     CGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaa                                <  1:3168752‑M1/100‑1 (MQ=255)
                                                                      ggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               >  2:1767636‑M2/30‑100 (MQ=255)
                                                                      ggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               >  1:918895‑M2/30‑100 (MQ=255)
                                                                      ggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGAGAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATGCTGCaaaa                               >  2:2681835‑M2/30‑100 (MQ=255)
                                                                      GGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               <  2:3706200‑M1/100‑1 (MQ=255)
                                                                      GGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               <  2:500602‑M1/100‑1 (MQ=255)
                                                                        ATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAAcc                             >  1:1813286‑M1/1‑100 (MQ=255)
                                                                         TGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCg                            >  1:3340729‑M1/1‑100 (MQ=255)
                                                                         TGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCg                            <  1:3560659‑M1/100‑1 (MQ=255)
                                                                          gCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGa                           >  1:1360286/1‑100 (MQ=255)
                                                                           cGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGAt                          <  1:2597489/100‑1 (MQ=255)
                                                                            gACGCTGACGCGTGTCATCCGTCCTACCGGTGGCGCATTGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATGCTGCatggccgctt                         <  2:823583/100‑10 (MQ=17)
                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGacg                         <  1:2847261/100‑3 (MQ=255)
                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATg                         <  2:3260830/100‑1 (MQ=255)
                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATg                         >  1:399720/1‑100 (MQ=255)
                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATg                         <  2:2964909/100‑1 (MQ=255)
                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATg                         <  2:351830/100‑1 (MQ=255)
                                                                               gCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGaca                      <  2:1264887/100‑1 (MQ=255)
                                                                                 tGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACAcc                    >  2:1117819/1‑100 (MQ=255)
                                                                                 tGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACAcc                    <  1:1132412/100‑1 (MQ=255)
                                                                                 tGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACAcc                    <  2:2026178/100‑1 (MQ=255)
                                                                                  gACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACca                   >  2:2893608/1‑100 (MQ=255)
                                                                                     gcgTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACcagca                >  1:2141331/1‑100 (MQ=255)
                                                                                      cgTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACcagcag               <  2:717971/100‑1 (MQ=255)
                                                                                       gTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGCTCAATTCTGCAAAACCGATGACACCagcagc              <  2:3555907/100‑1 (MQ=255)
                                                                                         cTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtg            >  1:1226671/1‑100 (MQ=255)
                                                                                           tATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          <  1:2963254/100‑1 (MQ=255)
                                                                                            atccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTgtgt         <  2:198028‑M2/93‑1 (MQ=255)
                                                                                                 acCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACg    <  1:1842280‑M2/98‑1 (MQ=255)
                                                                                                   cTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGga  <  2:1307973/100‑1 (MQ=255)
                                                                                                   cTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGga  <  1:3972742/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGA  >  NC_000913/4317850‑4318048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.